Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lottia_20gigantea_20[refseq_20GCF_5F000327385.1_202012-12-20] 4,469 sequences; 359,505,668 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2153 127 2e-24 seq2445 109 5e-19 seq3036 98.7 9e-16 seq2942 82.4 7e-11 >seq2153 Length=2898250 Score = 127 bits (140), Expect = 2e-24 Identities = 170/234 (73%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 57510 GAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGAC 57569 |||||| | ||| ||| ||||||| ||||||||| || || || ||| ||||| || Sbjct 643710 GAACCATTATTGAGAGAAAATCCCCATAGATTTGTAATATTCCCTATTCAATATGATGAT 643651 Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | ||||||||||| || |||||||| |||||||| | |||||||| ||| || Sbjct 643650 ATCTGGCAAATGTACAAAAAAGCTGAAGCATCATTTTGGACTGCTGAAGAAGTTGACTTG 643591 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAA----ATTTTATTAA 57685 ||||| ||| | | ||||||| | | | || |||| |||| | || ||| Sbjct 643590 TCTAAAGATTTAATTCATTGGGAAGCTTT---AAAACCTGA-AGAACAACACTTCATTTC 643535 Query 57686 ACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGT 57739 ||| || |||| || || || || ||||||||||| || || |||||||| Sbjct 643534 ACATGTCCTGGCTTTCTTTGCTGCCAGTGATGGTATTGTGAATGAAAATTTGGT 643481 >seq2445 Length=2603117 Score = 109 bits (120), Expect = 5e-19 Identities = 164/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||| |||| || ||||| |||||| | || |||||||| | Sbjct 1078501 ATGCAGATCTTCGTCAAGACTTTGACTGGTAAAACCATCACCCTTGAAGTTGAACCAGCT 1078442 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| |||||| | ||| || || ||||| | || || ||||| Sbjct 1078441 GATACCATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCCCCAGACCAA 1078382 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGAC--TATGAGCGATTATA 31370 || | | || || ||||| ||||| |||||||| || || ||| || | || | Sbjct 1078381 CAAAGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACACTATCAG--ACTACA 1078324 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||| ||||||||||| ||||| ||||||||| | ||| | | || |||| Sbjct 1078323 ACATCCAAAAAGAATCCACTCTCCATCTGGTATTAAGATTACGAGGAGGTA 1078273 Score = 109 bits (120), Expect = 5e-19 Identities = 164/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||| |||| || ||||| |||||| | || |||||||| | Sbjct 1078957 ATGCAGATCTTCGTCAAGACTTTGACTGGTAAAACCATCACCCTTGAAGTTGAACCAGCT 1078898 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| |||||| | ||| || || ||||| | || || || || Sbjct 1078897 GATACCATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCCCCAGATCAA 1078838 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGAC--TATGAGCGATTATA 31370 || || | || || ||||| ||||| |||||||| || || ||| || | || | Sbjct 1078837 CAACGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACACTATCAG--ACTACA 1078780 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||| ||||||||||| ||||| ||||||||| | ||| | | || |||| Sbjct 1078779 ACATCCAAAAAGAATCCACTCTCCATCTGGTATTAAGATTACGAGGAGGTA 1078729 Score = 104 bits (114), Expect = 2e-17 Identities = 155/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||| |||| || ||||| |||||| | || |||||||| | Sbjct 1078273 ATGCAGATCTTCGTCAAGACTTTGACTGGTAAAACCATCACCCTTGAAGTTGAACCAGCT 1078214 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| |||||| | ||| || || ||||| | || || ||||| Sbjct 1078213 GATACCATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCCCCAGACCAA 1078154 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGAC--TATGAGCGATTATA 31370 || | | || || ||||| ||||| |||||||| || || ||| || | || | Sbjct 1078153 CAAAGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACACTATCAG--ACTACA 1078096 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGA 31408 |||| ||||||||||| ||||| ||||| ||| | ||| Sbjct 1078095 ACATCCAAAAAGAATCCACTCTCCATCTTGTATTAAGA 1078058 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| || ||||| ||||| | || |||||||| | Sbjct 1078729 ATGCAGATCTTCGTCAAGACACTGACTGGTAAAACCATCACTCTGGAAGTTGAACCAGCT 1078670 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| |||||| | ||| || || ||||| | || || ||||| Sbjct 1078669 GATACCATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCCCCAGACCAA 1078610 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | | || || ||||| ||||| |||||||| || || | || || ||| Sbjct 1078609 CAAAGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACGCTTTCAGACTACAAC 1078550 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||||||||| ||||| ||||| ||| | ||| | | || |||| Sbjct 1078549 ATCCAAAAAGAATCAACTCTCCATCTTGTATTAAGATTACGAGGAGGTA 1078501 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||| |||| || ||||| |||||| | || |||||||| | Sbjct 1149635 ATGCAGATCTTCGTCAAGACTTTGACTGGTAAAACCATCACCCTTGAAGTTGAACCAGCA 1149576 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| |||||| | ||| || || ||||| | || || ||||| Sbjct 1149575 GATACCATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCCCCAGACCAA 1149516 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | | || || ||||| ||||| |||||||| || || | || || || Sbjct 1149515 CAAAGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACACTTTCAGACTACAAT 1149456 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || ||||||||||| ||||| ||||| ||| | ||| | || || || Sbjct 1149455 ATCCAAAAAGAATCCACTCTCCATCTTGTATTGAGATTAAGAGGAGG 1149409 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| |||| || ||||| |||||| | || || ||||| | Sbjct 1149863 ATGCAGATTTTCGTCAAGACATTGACTGGTAAAACCATCACCTTAGAGGTAGAACCAGCT 1149804 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| |||||| | ||| || || ||||| | || || ||||| Sbjct 1149803 GATACCATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCCCCAGACCAA 1149744 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | | || || ||||| ||||| |||||||| || || | || || ||| Sbjct 1149743 CAAAGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACACTTTCAGACTACAAC 1149684 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||||||||| ||||| ||||| ||| | ||| | | || |||| Sbjct 1149683 ATCCAAAAAGAATCCACTCTCCATCTTGTATTAAGATTACGAGGAGGTA 1149635 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| || ||||| |||||| | || || ||||| | Sbjct 1079185 ATGCAGATCTTCGTCAAGACATTGACTGGTAAAACCATCACCTTAGAGGTAGAACCAGCT 1079126 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| || ||| | ||| ||||| ||||| | || || ||||| Sbjct 1079125 GATACCATTGAAAATGTTAAAACTAAAATTCAAGACAAAGAAGGTATTCCCCCAGACCAA 1079066 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | | || || ||||| ||||| |||||||| || || | || || ||| Sbjct 1079065 CAAAGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACACTTTCAGACTACAAC 1079006 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||||||||| ||||| ||||| ||| | ||| | | || |||| Sbjct 1079005 ATCCAAAAAGAATCCACTCTCCATCTTGTATTAAGATTACGAGGAGGTA 1078957 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| || ||||| |||||| | || || ||||| | Sbjct 1150091 ATGCAGATCTTCGTCAAGACATTGACTGGTAAAACCATCACCTTAGAGGTAGAACCAGCT 1150032 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| || ||| | ||| ||||| ||||| | || || ||||| Sbjct 1150031 GATACCATTGAAAATGTTAAAACTAAAATTCAAGACAAAGAAGGTATTCCCCCAGACCAA 1149972 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | | || || ||||| ||||| |||||||| || || | || || ||| Sbjct 1149971 CAAAGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACACTTTCAGACTACAAC 1149912 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||||||||| ||||| ||||| ||| | ||| | | || |||| Sbjct 1149911 ATCCAAAAAGAATCAACTCTCCATCTTGTATTGAGATTACGAGGAGGTA 1149863 >seq3036 Length=1877736 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || || || || || |||||| |||| || ||||| | Sbjct 1771928 ATGCAGATCTTTGTCAAGACCCTCACTGGAAAGACCATCACCCTCGAAGTAGAACCAGCT 1771869 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| || ||| | || || |||||||| | || || || ||| Sbjct 1771868 GATACCATTGAAAATGTAAAAGCTAAGATCCAAGATAAGGAAGGAATTCCCCCAGATCAG 1771809 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || || ||||| ||||| | ||||| | || | ||||| ||| Sbjct 1771808 CAACGTCTTATCTTTGCTGGTAAACAACTAGAAGATGGCAGAACCCTCTCTGATTACAAC 1771749 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || ||||||||||| || ||||| |||||| || |||| || |||| Sbjct 1771748 ATCCAGAAAGAATCGACACTCCATCTTGTACTTCGATTGAGAGGAGGTA 1771700 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || || || || || |||||| |||| || ||||| | Sbjct 1772156 ATGCAGATCTTTGTCAAGACCCTCACTGGAAAGACCATCACCCTCGAAGTAGAACCAGCT 1772097 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| || ||| | || || |||||||| | || || || ||| Sbjct 1772096 GATACCATTGAAAATGTAAAAGCTAAGATCCAAGATAAGGAAGGAATTCCCCCAGATCAG 1772037 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || || ||||| ||||| | ||||| | || | ||||| ||| Sbjct 1772036 CAACGTCTTATCTTTGCTGGTAAACAACTAGAAGATGGCAGAACCCTCTCTGATTACAAC 1771977 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || ||||||||||| || ||||| |||||| || |||| || |||| Sbjct 1771976 ATCCAGAAAGAATCGACACTCCATCTTGTACTTCGATTGAGAGGAGGTA 1771928 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || || || || || |||||| |||| || ||||| | Sbjct 1839274 ATGCAGATCTTTGTCAAGACCCTCACTGGAAAGACCATCACCCTCGAAGTAGAACCAGCT 1839215 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| || ||| | || || |||||||| | || || || ||| Sbjct 1839214 GATACCATTGAAAATGTAAAAGCTAAGATCCAAGATAAGGAAGGAATTCCCCCAGATCAG 1839155 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || || ||||| ||||| | ||||| | || | ||||| ||| Sbjct 1839154 CAACGTCTTATCTTTGCTGGTAAACAACTAGAAGATGGCAGAACCCTCTCTGATTACAAC 1839095 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || ||||||||||| || ||||| |||||| || |||| || || Sbjct 1839094 ATCCAGAAAGAATCGACACTCCATCTTGTACTTCGATTGAGAGGAGG 1839048 >seq2942 Length=2007428 Score = 82.4 bits (90), Expect = 7e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 22181 TTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGCAAGTCCATGTACACA 22240 ||||| || || ||||| || || ||||| |||||| | || | || | | | Sbjct 1923531 TTCCATGCATAGAAATGCATGCTGGTTAATTTACCATAATTAGGTTCCGCAATATGAATA 1923472 Query 22241 TTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCATATTTATCA 22295 || ||||||||||||||||| ||| | |||||||||||||||||||| || |||| Sbjct 1923471 TTCAACGACTGACTCTGATCAATATAAGCTCCTCGATCGGCGGCCATCTTGATCA 1923417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445741498374480