Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lottia_20gigantea_20[refseq_20GCF_5F000327385.1_202012-12-20] 4,469 sequences; 359,505,668 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2153 163 4e-35 seq2942 131 2e-25 >seq2153 Length=2898250 Score = 163 bits (180), Expect = 4e-35 Identities = 162/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 33966 AAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 34025 |||||||||||||| || ||||||||||| ||||| || |||| |||||| || || Sbjct 643484 AAATTTTCATTCACAATACCATCACTGGCAGCAAAGAAAGCCAGGACATGTGAAATGAAG 643543 Query 34026 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCT 34085 | || ||| || ||| ||| | ||||| | | | ||||||||| | || |||||| Sbjct 643544 TGTTGTTCTTCAGGTTTTAAAGCTTCCCAATGAATTAAATCTTTAGACAAGTCAACTTCT 643603 Query 34086 TCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGG 34145 || | |||||||||||||| || || ||||| ||||| | |||||| |||| |||||| Sbjct 643604 TCAGCAGTCCAAAATGATGCTTCAGCTTTTTTGTACATTTGCCAGATATCATCATATTGA 643663 Query 34146 ATTGGGAAAATAACAAATCTATTTGGATTT 34175 || ||||| || |||||||||| |||||| Sbjct 643664 ATAGGGAATATTACAAATCTATGGGGATTT 643693 Score = 143 bits (158), Expect = 3e-29 Identities = 169/228 (74%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 ||||||||| ||| || | ||| ||| || || | || ||||||| |||||||| | Sbjct 642610 CCTCGTCTCGACTGATCAGTTCATTACTGAAGGTTAAACCAGGCATTATACCACGCTTCT 642669 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | | ||||||||| || || ||||| || || ||||| |||||||| || |||||||| | Sbjct 642670 TCAACCAAAATATAGAGGCAAATGAACCAGAGAAGAAAATTCCTTCAACGGCAGCAAAAG 642729 Query 33724 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGG 33780 ||| || ||| ||| ||| | || |||| ||||| ||| ||||||| || | Sbjct 642730 CAACAACTCTTTCTGAATAGTCTGCCTCTTCATCACCAATCCATTTTAGAGCCCAGTCTG 642789 Query 33781 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGT 33828 |||||||||||||||| || | ||||| || ||||| || | |||| Sbjct 642790 CCTTCTTTTTTACACAGGGTAATGTTTCAATAGCATTGAATAAGTAGT 642837 >seq2942 Length=2007428 Score = 131 bits (144), Expect = 2e-25 Identities = 137/180 (76%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 62636 ATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGT 62695 ||||| || || ||||| ||||||| |||||| | ||||| ||| |||||||||| | Sbjct 1921847 ATATGCCCCGTCTTTCTCGGCTAGTTCACAACTGGATTCTAACGCAGCGTAATAAATATT 1921788 Query 62696 TTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAG 62755 ||||||||| |||||||| || || |||||| | || ||||||||||| | | | Sbjct 1921787 CTCAAAGATCAACTTATTTAACTCCTGGGCTTCCTGACTCTCAAATGGATATCTCATTAA 1921728 Query 62756 AATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 62815 ||||| ||||| ||||| ||||| ||||| | ||||| || | ||||||| | || || Sbjct 1921727 TATAAAGGCGTCTGCTAACCCTTGGACACCCAATCCGATTGGACGATGTCTCATGTTGGA 1921668 Score = 122 bits (134), Expect = 1e-22 Identities = 152/204 (75%), Gaps = 6/204 (3%) Strand=Plus/Minus Query 63188 TTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGA 63247 |||||| || || ||||| ||||| || | | |||||||| | ||||||||||| | Sbjct 1920160 TTCGAATTCTTCACCCCAGACATTTTCGAGGCCTGGACATTCCCCTGGACACATCAAGGT 1920101 Query 63248 CCACTCTCCGTCATCCTT--CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 63305 ||| | ||| | | ||| ||| ||||||||||| | |||||||||||| || || ||| Sbjct 1920100 CCAGTTTCCAT--TGCTTTCCACCCGTTTCATAAATAAATCAGGAATCCACAGGGC-ATA 1920044 Query 63306 -AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 63364 |||| |||||| | || ||||| || || || ||||||||||| | ||| | ||| | Sbjct 1920043 GAATAAATCTCTGGCTCGCTGTTCTTCTTTACCAGTATTCTTTTTTAAATCTAAAAACTC 1919984 Query 63365 CATAATATCAGAATGCCACGGTTC 63388 | || ||| | ||||| ||||| Sbjct 1919983 GAAAACATCTGCGTGCCATGGTTC 1919960 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62988 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTA 63047 |||| | |||||| || ||||| |||||||| |||||||| || | ||||||||||| Sbjct 1920696 TATTCCACTATCTCTGTACAAAGGTTACTACATTTGATAGTACCAAGGTTTTGTTGATTT 1920637 Query 63048 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 63107 ||| ||||||| ||| ||||| | ||| |||| |||||||| ||| |||||||| Sbjct 1920636 GATTTTCTGTTACAGCTATCTTTATATAACATGTATGGTGTACCAGTCTCAGTCTGAGAT 1920577 Query 63108 TCTATAATCGCTTTCCA 63124 ||||| || || | ||| Sbjct 1920576 TCTATTATAGCATACCA 1920560 Score = 104 bits (114), Expect = 3e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 62387 TACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62446 ||| |||||||||||||||| ||||| | || || |||||||||||||| | ||| | Sbjct 1922581 TACCTGGAATTCTCCAGACAGAACTCTTCTGGTATATATATTACTGGTATAGGCTTCTAT 1922522 Query 62447 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62506 | |||||||| || | || ||||| || || || || ||||| || |||| ||||| Sbjct 1922521 AGCTTCATTATTACCAAGTATCTGAGCTGTAGAGGCTGTTGGCATCGGCGCCATTAATAA 1922462 Query 62507 ACTATTTCTAAGACC 62521 ||||||||| | ||| Sbjct 1922461 ACTATTTCTTACACC 1922447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629782416814320