Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lottia_20gigantea_20[refseq_20GCF_5F000327385.1_202012-12-20] 4,469 sequences; 359,505,668 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq2942 140 3e-28 seq2153 138 1e-27 >seq2942 Length=2007428 Score = 140 bits (154), Expect = 3e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 37969 CCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATA 38028 ||||||||||| | ||||||||| | | ||| | | ||| |||| || |||| |||| Sbjct 1920129 CCTGGACATTCCCCTGGACACATCAAGGTCCAGTTTCCATTGCTTTCCACCCGTTTCATA 1920070 Query 38029 AATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCT 38088 ||||||||||| | ||| | ||| ||||||||| ||| || | |||||| || || Sbjct 1920069 AATAAATCAGGAATCCACAGGGCATAGAATAAATCTCTGGCTCGCTGTTCTTCTTTACCA 1920010 Query 38089 ACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATC 38148 ||||||| |||| || ||| ||||| | ||| |||||||||||||| ||||| || Sbjct 1920009 GTATTCTTTTTTAAATCTAAAAACTCGAAAACATCTGCGTGCCATGGTTCAATATAGATA 1919950 Query 38149 GACATTGCTCCTGGTCT 38165 | | |||||||||||| Sbjct 1919949 GCAAATGCTCCTGGTCT 1919933 Score = 105 bits (116), Expect = 6e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 ||||| || |||||||| | |||||||| ||||||||||| || ||||| | ||| || Sbjct 1922580 ACCTGGAATTCTCCAGACAGAACTCTTCTGGTATATATATTACTGGTATAGGCTTCTATA 1922521 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 | |||||||||| | ||| |||| |||||| || || ||||| || || |||| | Sbjct 1922520 GCTTCATTATTACCAAGTATCTGAGCTGTAGAGGCTGTTGGCATCGGCGCCATTAATAAA 1922461 Query 37258 CTATTTCTCAATCCATGT 37275 |||||||| | |||||| Sbjct 1922460 CTATTTCTTACACCATGT 1922443 Score = 82.4 bits (90), Expect = 7e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 38292 CAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATAT 38351 ||| || ||||||||||| ||| ||||| || || ||||||||||||||||| |||| Sbjct 1919543 CAACCCGATTCCACCTGCCGATTTAGATATCAAGGCACATTGTTTTAACGTATCGTATAT 1919484 Query 38352 ACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTA 38394 |||||| ||||| || | | || | | || |||||||||| Sbjct 1919483 ACCTTCAATACTATCTCCACTCATAGTCAATAGAAAACAACTA 1919441 >seq2153 Length=2898250 Score = 138 bits (152), Expect = 1e-27 Identities = 168/227 (74%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 11648 AAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGt 11707 |||||| |||||| ||| || ||||||||| || ||||| || ||||| | || || Sbjct 642607 AAACCT-CGTCTCGACTGATCAGTTCATTACTGAAGGTTAAACCAGGCATTATACCACGC 642665 Query 11708 ttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCA 11767 || || | ||||||||||| |||||||||||||| ||||| ||||| || || || ||| Sbjct 642666 TTCTTCAACCAAAATATAGAGGCAAATGAACCAGAGAAGAAAATTCCTTCAACGGCAGCA 642725 Query 11768 AATGCTACTACTCTTTCTCCATA---TACCTTGTTGCTAGATATCCATTTTCTGGCCCAA 11824 || || || ||||||||| ||| | ||| | | ||||||||| ||||| Sbjct 642726 AAAGCAACAACTCTTTCTGAATAGTCTGCCTCTTCATCACCAATCCATTTTAGAGCCCAG 642785 Query 11825 TCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAA 11871 || || ||||||||||| || | |||||| ||||| || ||||| Sbjct 642786 TCTGCCTTCTTTTTTACACAGGGTAATGTTTCAATAGCATTGAATAA 642832 Score = 129 bits (142), Expect = 5e-25 Identities = 149/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 12014 AAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAG 12073 ||||| ||||| |||||||||||||| | ||||| || || || | |||| || ||| Sbjct 643484 AAATTTTCATTCACAATACCATCACTGGCAGCAAAGAAAGCCAGGACATGTGAAATGAAG 643543 Query 12074 TATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCT 12133 | || ||| || |||| ||||||| | ||||||||| || || || |||||| Sbjct 643544 TGTTGTTCTTCAGGTTTTAAAGCTTCCCAATGAATTAAATCTTTAGACAAGTCAACTTCT 643603 Query 12134 TCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTA 12193 ||| | |||||||| ||| | | || ||| ||||||| ||||||||||| ||| | | Sbjct 643604 TCAGCAGTCCAAAATGATGCTTCAGCTTTTTTGTACATTTGCCAGATATCATCATATTGA 643663 Query 12194 ATAGGGAAAATAACGAACCTA 12214 |||||||| || || || ||| Sbjct 643664 ATAGGGAATATTACAAATCTA 643684 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/224 (71%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 11432 ACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGAC 11491 || || ||||| ||||| || ||||||||| || || || ||||| ||||| || | Sbjct 642120 ACCTTATCACAGCCTAAGTCGACTAATAATCTGTCAGCTACAAATTCAATATATTGCTTC 642179 Query 11492 ATTAAACAACAATTCATACCTATAAGATCCACC-GGAATAGCAACTGTCAAAAACTCCTT 11550 || | | ||| |||||||| || | || || || | |||| | || ||||| || | Sbjct 642180 ATGAGATCACAGTTCATACCAATTA-ATTTACATGGTAAAGCATCAGTTAAAAATTCTTG 642238 Query 11551 TTCTATATTAACCGCATCAATGATTATCGACGTTATAAC--TTCCTTAGATGGTGGATGT 11608 ||| || | || |||||| | ||||| || || | ||||| ||| | || | Sbjct 642239 TTCAATTTGTACTGCATCAGTAATTAT--ACCATAAATTCTTTCCTGTGATAGCTTATTT 642296 Query 11609 AATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACC 11652 | ||||||| | |||||||||| |||||||||||||||| ||| Sbjct 642297 ACTAAATGTCTGTACATTAAACAGGCAAAATCACAATGTAGACC 642340 Score = 82.4 bits (90), Expect = 7e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949 |||| | | ||| |||||||||||||| || ||||| || || ||||| ||||| || Sbjct 643176 ATCTTTGATATAGGTATCTATTAATAAGCTGTACATCTCACTGTGGATATTCTCCATGGC 643235 Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATC 11994 | |||||| ||||||||||||| ||| |||| |||||| || Sbjct 643236 AACTTGAAAACCATAGAAACATCTTGCTTCTGTTATCTGTACCTC 643280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468498627033360