Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lottia_20gigantea_20[refseq_20GCF_5F000327385.1_202012-12-20] 4,469 sequences; 359,505,668 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2153 158 2e-33 seq2942 131 2e-25 >seq2153 Length=2898250 Score = 158 bits (174), Expect = 2e-33 Identities = 173/228 (76%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 ||||||||| ||| || ||||| || || || | || ||||||| |||||||| | Sbjct 642610 CCTCGTCTCGACTGATCAGTTCATTACTGAAGGTTAAACCAGGCATTATACCACGCTTCT 642669 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | | ||||||||| || |||||||| ||||| ||||| |||||||| || || ||||| | Sbjct 642670 TCAACCAAAATATAGAGGCAAATGAACCAGAGAAGAAAATTCCTTCAACGGCAGCAAAAG 642729 Query 50102 CAACAAGTCTCTCTCCATAA-CTGGCGCTG--TCATGTATCCACTTTTGAGCCCAATCGG 50158 |||||| ||| ||| ||| ||| | || ||| ||||| ||| ||||||| || | Sbjct 642730 CAACAACTCTTTCTGAATAGTCTGCCTCTTCATCACCAATCCATTTTAGAGCCCAGTCTG 642789 Query 50159 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGT 50206 |||||||||||||||| || | ||||| || ||||| || | |||| Sbjct 642790 CCTTCTTTTTTACACAGGGTAATGTTTCAATAGCATTGAATAAGTAGT 642837 Score = 158 bits (174), Expect = 2e-33 Identities = 161/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 50344 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 50403 |||||||||||||| || || |||||||| ||||| || |||| |||||| || || Sbjct 643484 AAATTTTCATTCACAATACCATCACTGGCAGCAAAGAAAGCCAGGACATGTGAAATGAAG 643543 Query 50404 TGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCT 50463 |||| ||| | ||| ||| | ||||| | | | ||||||||| | || |||||| Sbjct 643544 TGTTGTTCTTCAGGTTTTAAAGCTTCCCAATGAATTAAATCTTTAGACAAGTCAACTTCT 643603 Query 50464 TCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGG 50523 || | |||||||||||||| || || ||||| ||||| | |||||| |||| |||||| Sbjct 643604 TCAGCAGTCCAAAATGATGCTTCAGCTTTTTTGTACATTTGCCAGATATCATCATATTGA 643663 Query 50524 ATTGGGAAAATAACAAATCTATTTGGATTT 50553 || ||||| || |||||||||| |||||| Sbjct 643664 ATAGGGAATATTACAAATCTATGGGGATTT 643693 >seq2942 Length=2007428 Score = 131 bits (144), Expect = 2e-25 Identities = 175/239 (73%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 79851 ATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACA 79910 ||||| | |||||| || || ||||| |||| || | || |||||||| | ||||| Sbjct 1920169 ATATAGTTTTTCGAATTCTTCACCCCAGACATTTTCGAGGCCTGGACATTCCCCTGGACA 1920110 Query 79911 CATCAACGACCACTCTCCATCATCCTTT--ACTCGTTTCATAAAGAGATCAGGAATCCAA 79968 |||||| | ||| | ||||| | |||| || ||||||||||| | |||||||||||| Sbjct 1920109 CATCAAGGTCCAGTTTCCAT--TGCTTTCCACCCGTTTCATAAATAAATCAGGAATCCAC 1920052 Query 79969 AGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATC 80027 || || ||| |||| |||||||| || || || || || || ||||||||||| | ||| Sbjct 1920051 AGGGC-ATAGAATAAATCTCTGGCTCGCTGTTCTTCTTTACCAGTATTCTTTTTTAAATC 1919993 Query 80028 GAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTC 80086 | ||| | | || ||| | ||||| ||||| | || || || | |||| |||| Sbjct 1919992 TAAAAACTCGAAAACATCTGCGTGCCATGGTTCAATATAGATAGCAAATGCTCCTGGTC 1919934 Score = 116 bits (128), Expect = 5e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 79291 GATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAAT 79350 || ||| |||| ||| ||| | || || || ||||||| ||||||||| | ||||| Sbjct 1921864 GAACCTTTGTAAGTTGAATATGCCCCGTCTTTCTCGGCTAGTTCACAACTGGATTCTAAC 1921805 Query 79351 GCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCA 79410 || |||||||||| | || || ||| |||||| | || || ||||| | || ||| Sbjct 1921804 GCAGCGTAATAAATATTCTCAAAGATCAACTTATTTAACTCCTGGGCTTCCTGACTCTCA 1921745 Query 79411 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 79470 |||||||| | | | ||||| ||||||||||| ||||| ||||| | ||||| || Sbjct 1921744 AATGGATATCTCATTAATATAAAGGCGTCTGCTAACCCTTGGACACCCAATCCGATTGGA 1921685 Query 79471 CTATGTCTCTTATTAGA 79487 | ||||||| | || || Sbjct 1921684 CGATGTCTCATGTTGGA 1921668 Score = 109 bits (120), Expect = 8e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 79059 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCAC 79118 ||| || ||||||||||||| ||||| | || || |||||||||||||| | ||| | Sbjct 1922581 TACCTGGAATTCTCCAGACAGAACTCTTCTGGTATATATATTACTGGTATAGGCTTCTAT 1922522 Query 79119 CGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAA 79178 | ||||||||| || | || ||||| || || || |||||||| || |||| ||||| Sbjct 1922521 AGCTTCATTATTACCAAGTATCTGAGCTGTAGAGGCTGTTGGCATCGGCGCCATTAATAA 1922462 Query 79179 ACTATTTCTAAGACC 79193 ||||||||| | ||| Sbjct 1922461 ACTATTTCTTACACC 1922447 Score = 89.7 bits (98), Expect = 7e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 79660 TATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTA 79719 |||| | ||| || || || ||||||||||| || || || || | ||||||||||| Sbjct 1920696 TATTCCACTATCTCTGTACAAAGGTTACTACATTTGATAGTACCAAGGTTTTGTTGATTT 1920637 Query 79720 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGAT 79779 ||| ||||||| ||| ||||| | ||| | || |||||||| ||| |||||||| Sbjct 1920636 GATTTTCTGTTACAGCTATCTTTATATAACATGTATGGTGTACCAGTCTCAGTCTGAGAT 1920577 Query 79780 TCTATAATCGCTTTCCA 79796 ||||| || || | ||| Sbjct 1920576 TCTATTATAGCATACCA 1920560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718228675709160