Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lottia_20gigantea_20[refseq_20GCF_5F000327385.1_202012-12-20] 4,469 sequences; 359,505,668 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq2153 113 4e-20 >seq2153 Length=2898250 Score = 113 bits (124), Expect = 4e-20 Identities = 146/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 14257 CCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAA 14316 ||||||||||||| || ||||||||||| || ||||| || |||| | | | ||| | Sbjct 643482 CCAAATTTTCATTCACAATACCATCACTGGCAGCAAAGAAAGCCAGGACATGTGAAATGA 643541 Query 14317 AGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTT 14376 ||| ||| |||||| || | || ||||| |||||| ||||| | || |||| Sbjct 643542 AGTGTTGTTCTTCAGGTTTTAAAGCTTCCCAATGAATTAAATCTTTAGACAAGTCAACTT 643601 Query 14377 CATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATA 14436 | ||| | |||||||| || |||||||||| |||||| ||| || || | |||| Sbjct 643602 CTTCAGCAGTCCAAAATGATGCTTCAGCTTTTTTGTACATTTGCCAGATATCATCATATT 643661 Query 14437 ATATAGGAAAAACTACAAATCT 14458 ||||| || | ||||||||| Sbjct 643662 GAATAGGGAATATTACAAATCT 643683 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||| |||| ||| || ||||| || || ||||| || ||||| | || || || | Sbjct 642610 CCTCGTCTCGACTGATCAGTTCATTACTGAAGGTTAAACCAGGCATTATACCACGCTTCT 642669 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | ||||||||||| | |||||||| || || ||||| ||||| ||||| |||||||| | Sbjct 642670 TCAACCAAAATATAGAGGCAAATGAACCAGAGAAGAAAATTCCTTCAACGGCAGCAAAAG 642729 Query 14014 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14073 | | | || |||| | | ||| | || | ||||||||| |||||| || | Sbjct 642730 CAACAACTCTTTCTGAATAGTCTGCCTCTTCATCACCAATCCATTTTAGAGCCCAGTCTG 642789 Query 14074 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTC 14122 || ||||| | | | | ||||||||||||||| ||||| || || Sbjct 642790 CCTTCTTTTTTACACAGGGTAATGTTTCAATAGCATTGAATAAGTAGTC 642838 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/226 (71%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 13674 ACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGAC 13733 || |||||||| |||| || | || |||||| ||||| | ||| ||||||||||| | Sbjct 642120 ACCTTATCACAGCCTAAGTCGACTAATAATCTGTCAGCTACAAATTCAATATATTGCTTC 642179 Query 13734 ATTAAATCACAATTCATACCTATTAGTTTTACA-GGAATTATATTGGTTAAAAATTCTTT 13792 || | |||||| |||||||| |||| |||||| || | || ||||||||||||| Sbjct 642180 ATGAGATCACAGTTCATACCAATTA-ATTTACATGGTAAAGCATCAGTTAAAAATTCTTG 642238 Query 13793 TTCTATAGACACAGCCTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTT 13852 ||| || || || || | || ||| ||| | || | || || ||||| Sbjct 642239 TTCAATTTGTACTGCATCAGTAATTATACCATAAATTCTTTCCTGTGA--TAGCTTATTT 642296 Query 13853 --TAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCT 13896 || |||| | | |||||||| |||||||||||||| || |||| Sbjct 642297 ACTAAATGTCTGTACATTAAACAGGCAAAATCACAATGTAGACCCT 642342 Score = 96.9 bits (106), Expect = 3e-15 Identities = 111/148 (75%), Gaps = 5/148 (3%) Strand=Plus/Plus Query 13518 AAAAACTAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTA----GAAATAAC 13573 || || ||||||||| |||| |||| ||| || || ||||| || || || Sbjct 641691 AACAATTAAAAATCAGCATCCAATGTAAATTGATGATTA-CTTTGACCACCTGACATCAC 641749 Query 13574 GCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGA 13633 |||||| |||||||||||| ||||| || ||||| ||||||| ||| ||||| || || Sbjct 641750 TCCCATTCTTTGATATTCACCTACTCTCTTCTCAAAAAAGTTAGATTTCCCTTCAAGGGA 641809 Query 13634 TATATTTTCCATAAAATCAAATGGATTT 13661 ||| ||||||||||||||| || ||| Sbjct 641810 TATTAATTCCATAAAATCAAAAGGGTTT 641837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479701201194600