Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lottia_20gigantea_20[refseq_20GCF_5F000327385.1_202012-12-20] 4,469 sequences; 359,505,668 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq2153 113 4e-20 seq480 82.4 7e-11 >seq2153 Length=2898250 Score = 113 bits (124), Expect = 4e-20 Identities = 146/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 14045 CCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAA 14104 |||| |||||||| |||||||||||||| || ||||| || |||| | | | ||| | Sbjct 643482 CCAAATTTTCATTCACAATACCATCACTGGCAGCAAAGAAAGCCAGGACATGTGAAATGA 643541 Query 14105 AGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTT 14164 ||| ||| |||||| || | || ||||| |||||| ||||| | || |||| Sbjct 643542 AGTGTTGTTCTTCAGGTTTTAAAGCTTCCCAATGAATTAAATCTTTAGACAAGTCAACTT 643601 Query 14165 CATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATA 14224 | ||| | |||||||| || |||||||||| |||||| ||| || || | |||| Sbjct 643602 CTTCAGCAGTCCAAAATGATGCTTCAGCTTTTTTGTACATTTGCCAGATATCATCATATT 643661 Query 14225 ATATAGGAAAAACTACAAATCT 14246 ||||| || | ||||||||| Sbjct 643662 GAATAGGGAATATTACAAATCT 643683 Score = 111 bits (122), Expect = 2e-19 Identities = 163/226 (72%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 13462 ACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGAC 13521 || |||||||| |||| || | ||||||||| ||||| | ||| ||||||||||| | Sbjct 642120 ACCTTATCACAGCCTAAGTCGACTAATAATCTGTCAGCTACAAATTCAATATATTGCTTC 642179 Query 13522 ATTAAATCACAATTCATACCTATTAGTTTTACA-GGAATTATATTAGTTAAAAATTCTTT 13580 || | |||||| |||||||| |||| |||||| || | || |||||||||||||| Sbjct 642180 ATGAGATCACAGTTCATACCAATTA-ATTTACATGGTAAAGCATCAGTTAAAAATTCTTG 642238 Query 13581 TTCTATAGACACAGCCTCGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTT 13640 ||| || || || || | || ||| | ||| | || | || || ||||| Sbjct 642239 TTCAATTTGTACTGCATCAGTAATTATACCATAAATTCTTTCCTGTGA--TAGCTTATTT 642296 Query 13641 --TAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCT 13684 || |||| | | |||||||| |||||||||||||| || |||| Sbjct 642297 ACTAAATGTCTGTACATTAAACAGGCAAAATCACAATGTAGACCCT 642342 Score = 100 bits (110), Expect = 3e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||| |||| ||| || ||||| || || ||||| || ||||| | || || || | Sbjct 642610 CCTCGTCTCGACTGATCAGTTCATTACTGAAGGTTAAACCAGGCATTATACCACGCTTCT 642669 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | ||||||||||| | || ||||| || || ||||| ||||| ||||| |||||||| | Sbjct 642670 TCAACCAAAATATAGAGGCAAATGAACCAGAGAAGAAAATTCCTTCAACGGCAGCAAAAG 642729 Query 13802 CTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAG 13861 | | | || |||| | | ||| | || | ||||||||| |||||| || | Sbjct 642730 CAACAACTCTTTCTGAATAGTCTGCCTCTTCATCACCAATCCATTTTAGAGCCCAGTCTG 642789 Query 13862 AtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAA 13904 || ||||| | | | | |||||| || ||||||||||| Sbjct 642790 CCTTCTTTTTTACACAGGGTAATGTTTCAATAGCATTGAATAA 642832 Score = 96.9 bits (106), Expect = 3e-15 Identities = 111/148 (75%), Gaps = 5/148 (3%) Strand=Plus/Plus Query 13306 AAAAACTAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTA----GAAATAAC 13361 || || ||||||||| |||| |||| ||| || || ||||| || || || Sbjct 641691 AACAATTAAAAATCAGCATCCAATGTAAATTGATGATTA-CTTTGACCACCTGACATCAC 641749 Query 13362 GCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGA 13421 |||||| |||||||||||| ||||| || ||||||||||||| ||| ||||| || || Sbjct 641750 TCCCATTCTTTGATATTCACCTACTCTCTTCTCAAAAAAGTTAGATTTCCCTTCAAGGGA 641809 Query 13422 TATATTTTCCATAAAATCGAATGGATTT 13449 ||| |||||||||||| || || ||| Sbjct 641810 TATTAATTCCATAAAATCAAAAGGGTTT 641837 >seq480 Length=4256419 Score = 82.4 bits (90), Expect = 7e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 131442 GAGGAGATTTGGAAATTTTAGGATATTGTATAATAAAATGGTTAGGTGGTAAATTGCCAT 131501 |||| || || || |||||| | |||||| || || |||||||| |||||||| | |||| Sbjct 1193138 GAGGTGACTTTGAGATTTTAAGTTATTGTTTATTACAATGGTTATGTGGTAAACTACCAT 1193079 Query 131502 GGGAAGATGATTTAAAAAAT 131521 |||||||| ||||||| ||| Sbjct 1193078 GGGAAGATAATTTAAATAAT 1193059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478562064833160