Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lottia_20gigantea_20[refseq_20GCF_5F000327385.1_202012-12-20] 4,469 sequences; 359,505,668 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2153 172 7e-38 seq2942 120 4e-22 >seq2153 Length=2898250 Score = 172 bits (190), Expect = 7e-38 Identities = 164/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 42449 AAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 42508 |||||||| ||||| || || |||||||| ||||| || |||| |||||| || || Sbjct 643484 AAATTTTCATTCACAATACCATCACTGGCAGCAAAGAAAGCCAGGACATGTGAAATGAAG 643543 Query 42509 TATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCT 42568 | || ||| || ||| |||| | ||||| | | | ||||||||| | || |||||| Sbjct 643544 TGTTGTTCTTCAGGTTTTAAAGCTTCCCAATGAATTAAATCTTTAGACAAGTCAACTTCT 643603 Query 42569 TCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGA 42628 || | ||||||||||||||||| || ||||| ||||| | ||||||||||| ||||||| Sbjct 643604 TCAGCAGTCCAAAATGATGCTTCAGCTTTTTTGTACATTTGCCAGATATCATCATATTGA 643663 Query 42629 ATTGGGAAAATAACAAATCTATTTGGATTT 42658 || ||||| || |||||||||| |||||| Sbjct 643664 ATAGGGAATATTACAAATCTATGGGGATTT 643693 Score = 143 bits (158), Expect = 4e-29 Identities = 170/228 (75%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| |||| ||| || | ||| || || || | || ||||||| |||||||| | Sbjct 642610 CCTCGTCTCGACTGATCAGTTCATTACTGAAGGTTAAACCAGGCATTATACCACGCTTCT 642669 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | | |||||||||||| |||||||| ||||| ||||| |||||||| || || ||||| | Sbjct 642670 TCAACCAAAATATAGAGGCAAATGAACCAGAGAAGAAAATTCCTTCAACGGCAGCAAAAG 642729 Query 42207 CAATAAGTCTCTCTCCATA-ACCGGCACT--GTCATGTATCCACTTTTGAGCCCAATCGG 42263 ||| || ||| ||| ||| | | | || ||| ||||| ||| ||||||| || | Sbjct 642730 CAACAACTCTTTCTGAATAGTCTGCCTCTTCATCACCAATCCATTTTAGAGCCCAGTCTG 642789 Query 42264 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGT 42311 |||||||||||||||| || | ||||| || ||||| || | |||| Sbjct 642790 CCTTCTTTTTTACACAGGGTAATGTTTCAATAGCATTGAATAAGTAGT 642837 >seq2942 Length=2007428 Score = 120 bits (132), Expect = 4e-22 Identities = 157/213 (74%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 71934 ATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACA 71993 ||||| | |||||| || || ||||| |||| || | || |||||||| ||||| Sbjct 1920169 ATATAGTTTTTCGAATTCTTCACCCCAGACATTTTCGAGGCCTGGACATTCCCCTGGACA 1920110 Query 71994 CATCAATGACCACTCTCCATCATCATTT--ACTCGTTTCATAAAGAGATCAGGAATCCAA 72051 |||||| | ||| | ||||| | ||| || ||||||||||| | |||||||||||| Sbjct 1920109 CATCAAGGTCCAGTTTCCAT--TGCTTTCCACCCGTTTCATAAATAAATCAGGAATCCAC 1920052 Query 72052 AGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATC 72110 || || ||| |||| |||||||| || || || || || || ||||||||||| | ||| Sbjct 1920051 AGGGC-ATAGAATAAATCTCTGGCTCGCTGTTCTTCTTTACCAGTATTCTTTTTTAAATC 1919993 Query 72111 GAGGAACGCCATAATATCAGAATGCCACGGTTC 72143 | ||| | | || ||| | ||||| ||||| Sbjct 1919992 TAAAAACTCGAAAACATCTGCGTGCCATGGTTC 1919960 Score = 111 bits (122), Expect = 2e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 71392 TATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTT 71451 |||| || ||||| ||||||||||||||||| | ||||| || | |||||||| | Sbjct 1921846 TATGCCCCGTCTTTCTCGGCTAGTTCACAACTGGATTCTAACGCAGCGTAATAAATATTC 1921787 Query 71452 TCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGA 71511 || || ||| |||||| | || || |||||| | || ||||||||||| | | | Sbjct 1921786 TCAAAGATCAACTTATTTAACTCCTGGGCTTCCTGACTCTCAAATGGATATCTCATTAAT 1921727 Query 71512 ATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGA 71570 ||||| ||||||||||| ||||| || || | ||||| || | |||||| | || || Sbjct 1921726 ATAAAGGCGTCTGCTAACCCTTGGACACCCAATCCGATTGGACGATGTCTCATGTTGGA 1921668 Score = 102 bits (112), Expect = 1e-16 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 71142 TACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCAC 71201 ||| || ||||||||||||| ||||| | || || |||||||||||||| | ||| | Sbjct 1922581 TACCTGGAATTCTCCAGACAGAACTCTTCTGGTATATATATTACTGGTATAGGCTTCTAT 1922522 Query 71202 TGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAG 71261 | |||||||| || | || ||||| || || || || ||||| || |||| |||| Sbjct 1922521 AGCTTCATTATTACCAAGTATCTGAGCTGTAGAGGCTGTTGGCATCGGCGCCATTAATAA 1922462 Query 71262 ACTATTTCTAAGACCATGT 71280 ||||||||| | ||||||| Sbjct 1922461 ACTATTTCTTACACCATGT 1922443 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 71724 TACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGT 71783 |||||||| | | || |||| | || || || ||||| |||||||| ||||| || Sbjct 1920715 TACCTCATCTGGAGCGCTGTATTCCACTATCTCTGTACAAAGGTTACTACATTTGATAGT 1920656 Query 71784 TCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGT 71843 || | ||||||||||| ||| ||||||| ||| ||||| | || | || || Sbjct 1920655 ACCAAGGTTTTGTTGATTTGATTTTCTGTTACAGCTATCTTTATATAACATGTATGGTGT 1920596 Query 71844 ACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 71879 |||||| ||| ||||||||||||| || || | ||| Sbjct 1920595 ACCAGTCTCAGTCTGAGATTCTATTATAGCATACCA 1920560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671101708486440