Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lottia_20gigantea_20[refseq_20GCF_5F000327385.1_202012-12-20] 4,469 sequences; 359,505,668 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq2445 125 6e-24 seq1919 109 5e-19 >seq2445 Length=2603117 Score = 125 bits (138), Expect = 6e-24 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||||||||| ||||| || | ||| || || ||||||||||| |||||||| || Sbjct 1149865 CCTCCTCGTAATCTCAATACAAGATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCTGAA 1149924 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| || ||||||||||||||| || ||| | || | || ||||| || ||| Sbjct 1149925 AGTGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGGTCTGGGGGA 1149984 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||||||||| |||||| ||| || | ||| | ||| | ||||| Sbjct 1149985 ATACCTTCTTTGTCTTGAATTTTAGTTTTAACATTTTCAATGGTATCAGCTGGTTCTACC 1150044 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTTTAAA 20215 || | ||| |||||||| || ||||| || ||||| || || |||||| | ||| Sbjct 1150045 TCTAAGGTGATGGTTTTACCAGTCAATGTCTTGACGAAGATCTGCATTCTGAAA 1150098 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||||||||| || || |||| ||| || || ||||||||||| |||||||| || Sbjct 1078275 CCTCCTCGTAATCTTAATACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAGTCTGAT 1078334 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| || ||||||||||||||| || ||| | || | || ||||| || ||| Sbjct 1078335 AGTGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGGTCTGGGGGA 1078394 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | |||||||| || |||||| ||| || | ||| | ||| | ||||| | Sbjct 1078395 ATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCAGCTGGTTCAACT 1078454 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | ||| |||||||| || ||||| || ||||| || || ||||| Sbjct 1078455 TCAAGGGTGATGGTTTTACCAGTCAAAGTCTTGACGAAGATCTGCAT 1078501 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||||||||| || || |||| ||| || || ||||||||||| |||||||| || Sbjct 1078731 CCTCCTCGTAATCTTAATACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAGTCTGAT 1078790 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| || ||||||||||||||| || ||| | || | | |||||||| ||| Sbjct 1078791 AGTGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATCAATCGTTGTTGATCTGGGGGA 1078850 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | |||||||| || |||||| ||| || | ||| | ||| | ||||| | Sbjct 1078851 ATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCAGCTGGTTCAACT 1078910 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | ||| |||||||| || ||||| || ||||| || || ||||| Sbjct 1078911 TCAAGGGTGATGGTTTTACCAGTCAAAGTCTTGACGAAGATCTGCAT 1078957 Score = 120 bits (132), Expect = 3e-22 Identities = 167/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||||||||| || || || | ||| || || ||||||||||| |||||||| || Sbjct 1078959 CCTCCTCGTAATCTTAATACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAGTCTGAA 1079018 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| || ||||||||||||||| || ||| | || | || ||||| || ||| Sbjct 1079019 AGTGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGGTCTGGGGGA 1079078 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||||||||| |||||| ||| || | ||| | ||| | ||||| Sbjct 1079079 ATACCTTCTTTGTCTTGAATTTTAGTTTTAACATTTTCAATGGTATCAGCTGGTTCTACC 1079138 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTTTAAA 20215 || | ||| |||||||| || ||||| || ||||| || || |||||| | ||| Sbjct 1079139 TCTAAGGTGATGGTTTTACCAGTCAATGTCTTGACGAAGATCTGCATTCTGAAA 1079192 Score = 118 bits (130), Expect = 9e-22 Identities = 210/303 (69%), Gaps = 14/303 (5%) Strand=Plus/Plus Query 19920 aataaaacatgtgtt----taattt-aataaattttattataaaatttaaat---at-at 19970 |||||||||| | || |||||| ||||| || ||| || ||| ||| || | Sbjct 1077971 AATAAAACATTTATTATTGTAATTTCAATAATTTAAATTTCAAGATTAAAAACAAATCAG 1078030 Query 19971 tttatcatttt-----CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTG 20025 | || ||||| ||||||||||| || || || | ||| || || ||||||||||| Sbjct 1078031 TACATGATTTTACTGGCCTCCTCGTAATCTTAATACAAGATGGAGAGTGGATTCTTTTTG 1078090 Query 20026 TATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCT 20085 |||||||| || | ||| || ||||||||||||||| || ||| | || | || Sbjct 1078091 GATGTTGTAGTCTGATAGTGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATCAATCT 1078150 Query 20086 CTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGA 20145 ||||| || ||| | |||||||| || |||||| ||| || | ||| | Sbjct 1078151 TTGTTGGTCTGGGGGAATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATGGT 1078210 Query 20146 ATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTG 20205 ||| | ||||| ||| | ||| |||||||| || ||||| || ||||| || || || Sbjct 1078211 ATCAGCTGGTTCAACTTCAAGGGTGATGGTTTTACCAGTCAAAGTCTTGACGAAGATCTG 1078270 Query 20206 CAT 20208 ||| Sbjct 1078271 CAT 1078273 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||||||||| || || || | ||| || || ||||||||||| |||||||| || Sbjct 1149637 CCTCCTCGTAATCTTAATACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAGTCTGAA 1149696 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| || ||||||||||||||| || ||| | || | || ||||| || ||| Sbjct 1149697 AGTGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGGTCTGGGGGA 1149756 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | |||||||| || |||||| ||| || | ||| | ||| | ||||| Sbjct 1149757 ATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCAGCTGGTTCTACC 1149816 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | ||| |||||||| || ||||| || ||||| ||||| ||||| Sbjct 1149817 TCTAAGGTGATGGTTTTACCAGTCAATGTCTTGACGAAAATCTGCAT 1149863 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||||||||| || || || | ||| || || ||||||||||| |||||||| || Sbjct 1078503 CCTCCTCGTAATCTTAATACAAGATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCTGAA 1078562 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| || ||||||||||||||| || ||| | || | || ||||| || ||| Sbjct 1078563 AGCGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGGTCTGGGGGA 1078622 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | |||||||| || |||||| ||| || | ||| | ||| | ||||| | Sbjct 1078623 ATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCAGCTGGTTCAACT 1078682 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| || |||||||| || |||| || ||||| || || ||||| Sbjct 1078683 TCCAGAGTGATGGTTTTACCAGTCAGTGTCTTGACGAAGATCTGCAT 1078729 Score = 113 bits (124), Expect = 4e-20 Identities = 209/303 (69%), Gaps = 14/303 (5%) Strand=Plus/Plus Query 19920 aataaaacatgtgtt----taattt-aataaattttattataaaatttaaat---at-at 19970 |||||||||| | || |||||| ||||| || ||| || ||| ||| || | Sbjct 1149333 AATAAAACATTTATTATTGTAATTTCAATAATTTAAATTTCAAGATTAAAAACAAATCAG 1149392 Query 19971 tttatcatttt-----CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTG 20025 | || ||||| ||||||| ||| ||||| || | ||| || || ||||||||||| Sbjct 1149393 TACATGATTTTACTGGCCTCCTCTTAATCTCAATACAAGATGGAGAGTGGATTCTTTTTG 1149452 Query 20026 TATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCT 20085 || ||||| || | ||| || ||||||||||||||| || ||| | || | || Sbjct 1149453 GATATTGTAGTCTGAAAGTGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATCAATCT 1149512 Query 20086 CTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGA 20145 ||||| || ||| | |||||||| || |||||| ||| || | ||| | Sbjct 1149513 TTGTTGGTCTGGGGGAATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATGGT 1149572 Query 20146 ATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTG 20205 ||| | ||||| ||| | ||| |||||||| || ||||| || ||||| || || || Sbjct 1149573 ATCTGCTGGTTCAACTTCAAGGGTGATGGTTTTACCAGTCAAAGTCTTGACGAAGATCTG 1149632 Query 20206 CAT 20208 ||| Sbjct 1149633 CAT 1149635 >seq1919 Length=159031 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||| ||||| ||||| |||||||| || || |||||||| || ||||||||||| Sbjct 44211 CCTCCACGTAATCTCAATACCAAATGGAGGGTCGATTCTTTCTGGATGTTGTAATCCGAG 44270 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | |||| | |||||| | ||| || || ||| |||| | | ||||||||| || Sbjct 44271 AGAGTTCTGCCATCTTCAAGTTGCTTTCCAGCAAAAATCAATCGCTGTTGATCTGGTGGA 44330 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||||||| || ||| || ||| || | | | | ||| | ||||| Sbjct 44331 ATGCCTTCTTTATCTTGAATCTTGGCTTTGACATTTTCTATGGTATCAGCTGGTTCGACC 44390 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTT 20211 || | ||| ||||| || || ||||| |||||||| || || ||||| || Sbjct 44391 TCTAAGGTGATGGTCTTACCAGTCAATGTTTTGACGAAGATCTGCATCTT 44440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419564346789789