Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lottia_20gigantea_20[refseq_20GCF_5F000327385.1_202012-12-20] 4,469 sequences; 359,505,668 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq2153 123 3e-23 >seq2153 Length=2898250 Score = 123 bits (136), Expect = 3e-23 Identities = 163/225 (72%), Gaps = 1/225 (0%) Strand=Plus/Plus Query 21493 CAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCT 21552 ||||||| | || | ||| || | ||||||| || |||||||| ||||||| || | Sbjct 642606 CAAACCT-CGTCTCGACTGATCAGTTCATTACTGAAGGTTAAACCAGGCATTATACCACG 642664 Query 21553 CTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGC 21612 ||| || ||||||||||| || ||||||| || || |||||||| || ||||||||||| Sbjct 642665 CTTCTTCAACCAAAATATAGAGGCAAATGAACCAGAGAAGAAAATTCCTTCAACGGCAGC 642724 Query 21613 AAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTTCTGCCCA 21672 ||| ||||| | || ||| || | |||| ||| ||||||||| ||||| Sbjct 642725 AAAAGCAACAACTCTTTCTGAATAGTCTGCCTCTTCATCACCAATCCATTTTAGAGCCCA 642784 Query 21673 TTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAA 21717 | |||||| | ||| | ||| | ||| |||||||| || || Sbjct 642785 GTCTGCCTTCTTTTTTACACAGGGTAATGTTTCAATAGCATTGAA 642829 Score = 116 bits (128), Expect = 4e-21 Identities = 147/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 21861 CCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAA 21920 |||| |||||||| || || ||||||||||| ||||| || |||| | || | || | Sbjct 643482 CCAAATTTTCATTCACAATACCATCACTGGCAGCAAAGAAAGCCAGGACATGTGAAATGA 643541 Query 21921 AATATCGTTCGTTATCTGTTAATTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTT 21980 | | | |||| | | | |||| || ||||| | ||||||||| || || || |||| Sbjct 643542 AGTGTTGTTCTTCAGGTTTTAAAGCTTCCCAATGAATTAAATCTTTAGACAAGTCAACTT 643601 Query 21981 CTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTTTATACATAATCCAGATATCATTATATA 22040 |||||| |||||||| || ||| ||||| ||||| ||||||||||| |||| Sbjct 643602 CTTCAGCAGTCCAAAATGATGCTTCAGCTTTTTTGTACATTTGCCAGATATCATCATATT 643661 Query 22041 TTATTGGAAATATTACAAACCT 22062 || || ||||||||||| || Sbjct 643662 GAATAGGGAATATTACAAATCT 643683 Score = 96.9 bits (106), Expect = 4e-15 Identities = 113/151 (75%), Gaps = 5/151 (3%) Strand=Plus/Plus Query 21127 TTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttt----tGACATAATTCCCA 21182 ||||||||||||||| |||| || || || | |||| |||||| | ||||| Sbjct 641696 TTAAAAATCAGCATCCAATGTAAATTGATGAT-TACTTTGACCACCTGACATCACTCCCA 641754 Query 21183 TTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAG 21242 || ||||||| |||| ||||| || || ||||| || | || ||||| | ||||| Sbjct 641755 TTCTTTGATATTCACCTACTCTCTTCTCAAAAAAGTTAGATTTCCCTTCAAGGGATATTA 641814 Query 21243 ATTCCATAAAATCAAATGGATTTTCAGATTT 21273 |||||||||||||||| || |||||||| || Sbjct 641815 ATTCCATAAAATCAAAAGGGTTTTCAGAGTT 641845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531871086691560