Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lottia_20gigantea_20[refseq_20GCF_5F000327385.1_202012-12-20] 4,469 sequences; 359,505,668 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2153 161 1e-34 seq2942 131 2e-25 >seq2153 Length=2898250 Score = 161 bits (178), Expect = 1e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 33686 CCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 33745 |||||||||||||||| || || |||||||| ||||| || |||| |||||| || | Sbjct 643482 CCAAATTTTCATTCACAATACCATCACTGGCAGCAAAGAAAGCCAGGACATGTGAAATGA 643541 Query 33746 AATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTT 33805 | | || ||| || ||| ||| | ||||| | | | ||||||||| | || |||| Sbjct 643542 AGTGTTGTTCTTCAGGTTTTAAAGCTTCCCAATGAATTAAATCTTTAGACAAGTCAACTT 643601 Query 33806 CTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATT 33865 |||| | |||||||||||||| || || ||||| ||||| | |||||| |||| ||||| Sbjct 643602 CTTCAGCAGTCCAAAATGATGCTTCAGCTTTTTTGTACATTTGCCAGATATCATCATATT 643661 Query 33866 GGATTGGGAAAATAACAAATCTATTTGGATTT 33897 | || ||||| || |||||||||| |||||| Sbjct 643662 GAATAGGGAATATTACAAATCTATGGGGATTT 643693 Score = 149 bits (164), Expect = 8e-31 Identities = 170/228 (75%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 ||||||||| ||| || ||||| || || || | || ||||||| |||||||| | Sbjct 642610 CCTCGTCTCGACTGATCAGTTCATTACTGAAGGTTAAACCAGGCATTATACCACGCTTCT 642669 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | | ||||||||| || || ||||| ||||| ||||| |||||||| || |||||||| | Sbjct 642670 TCAACCAAAATATAGAGGCAAATGAACCAGAGAAGAAAATTCCTTCAACGGCAGCAAAAG 642729 Query 33446 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGG 33502 ||| || ||| ||| ||| | || |||| ||||| ||| ||||||| || | Sbjct 642730 CAACAACTCTTTCTGAATAGTCTGCCTCTTCATCACCAATCCATTTTAGAGCCCAGTCTG 642789 Query 33503 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGT 33550 |||||||||||||||| || | ||||| || ||||| || | |||| Sbjct 642790 CCTTCTTTTTTACACAGGGTAATGTTTCAATAGCATTGAATAAGTAGT 642837 >seq2942 Length=2007428 Score = 131 bits (144), Expect = 2e-25 Identities = 154/204 (75%), Gaps = 6/204 (3%) Strand=Plus/Minus Query 63137 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 63196 |||||| || || ||||| ||||| || | || |||||||| | ||||||||||| | Sbjct 1920160 TTCGAATTCTTCACCCCAGACATTTTCGAGGCCTGGACATTCCCCTGGACACATCAAGGT 1920101 Query 63197 CCACTCTCCGTCATCCTT--CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 63254 ||| | ||| | | ||| ||| ||||||||||| | |||||||||||| || || ||| Sbjct 1920100 CCAGTTTCCAT--TGCTTTCCACCCGTTTCATAAATAAATCAGGAATCCACAGGGC-ATA 1920044 Query 63255 -AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 63313 |||| |||||||| || ||||| || || || ||||||||||| | ||| | ||| | Sbjct 1920043 GAATAAATCTCTGGCTCGCTGTTCTTCTTTACCAGTATTCTTTTTTAAATCTAAAAACTC 1919984 Query 63314 CATAATATCAGAATGCCACGGTTC 63337 | || ||| | ||||| ||||| Sbjct 1919983 GAAAACATCTGCGTGCCATGGTTC 1919960 Score = 129 bits (142), Expect = 7e-25 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 62586 TATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTT 62645 |||| || || ||||| |||||||||||||| | ||||| ||| |||||||||| | Sbjct 1921846 TATGCCCCGTCTTTCTCGGCTAGTTCACAACTGGATTCTAACGCAGCGTAATAAATATTC 1921787 Query 62646 TCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGA 62705 || |||||| |||||||| || || |||||| | || ||||||||||| | | | Sbjct 1921786 TCAAAGATCAACTTATTTAACTCCTGGGCTTCCTGACTCTCAAATGGATATCTCATTAAT 1921727 Query 62706 ATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 62764 ||||| ||||| ||||| ||||| ||||| | ||||| || | ||||||| | || || Sbjct 1921726 ATAAAGGCGTCTGCTAACCCTTGGACACCCAATCCGATTGGACGATGTCTCATGTTGGA 1921668 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62937 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTA 62996 |||| | |||||| || ||||| |||||||| |||||||| || | ||||||||||| Sbjct 1920696 TATTCCACTATCTCTGTACAAAGGTTACTACATTTGATAGTACCAAGGTTTTGTTGATTT 1920637 Query 62997 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 63056 ||| ||||||| ||| ||||| | ||| |||| |||||||| ||| |||||||| Sbjct 1920636 GATTTTCTGTTACAGCTATCTTTATATAACATGTATGGTGTACCAGTCTCAGTCTGAGAT 1920577 Query 63057 TCTATAATCGCTTTCCA 63073 ||||| || || | ||| Sbjct 1920576 TCTATTATAGCATACCA 1920560 Score = 100 bits (110), Expect = 4e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 62336 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62395 ||| || ||||||||||||| ||||| | || || |||||||||||||| | ||| | Sbjct 1922581 TACCTGGAATTCTCCAGACAGAACTCTTCTGGTATATATATTACTGGTATAGGCTTCTAT 1922522 Query 62396 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62455 | |||||||| || | || ||||| || || || || ||||| || |||| ||||| Sbjct 1922521 AGCTTCATTATTACCAAGTATCTGAGCTGTAGAGGCTGTTGGCATCGGCGCCATTAATAA 1922462 Query 62456 ACTATTTCTAAGACC 62470 ||||||||| | ||| Sbjct 1922461 ACTATTTCTTACACC 1922447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622912400612040