Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lottia_20gigantea_20[refseq_20GCF_5F000327385.1_202012-12-20] 4,469 sequences; 359,505,668 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2153 159 4e-34 seq2942 134 2e-26 >seq2153 Length=2898250 Score = 159 bits (176), Expect = 4e-34 Identities = 162/211 (77%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 33045 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 33104 |||||||||||||| || || |||||||| ||||| || |||| |||||| || || Sbjct 643484 AAATTTTCATTCACAATACCATCACTGGCAGCAAAGAAAGCCAGGACATGTGAAATGAAG 643543 Query 33105 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCT 33164 | || ||| || ||| ||| | ||||| | | | ||||||||| | || |||||| Sbjct 643544 TGTTGTTCTTCAGGTTTTAAAGCTTCCCAATGAATTAAATCTTTAGACAAGTCAACTTCT 643603 Query 33165 TCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGA 33224 || | |||||||||||||| || || ||||| ||||| | |||||| |||| ||||||| Sbjct 643604 TCAGCAGTCCAAAATGATGCTTCAGCTTTTTTGTACATTTGCCAGATATCATCATATTGA 643663 Query 33225 ATTGGAAAAATAACAAATCTATTTGGATTTT 33255 || || || || |||||||||| ||||||| Sbjct 643664 ATAGGGAATATTACAAATCTATGGGGATTTT 643694 Score = 152 bits (168), Expect = 7e-32 Identities = 172/228 (75%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 ||||||||| ||| || | ||| || || || | || ||||||| |||||||| | Sbjct 642610 CCTCGTCTCGACTGATCAGTTCATTACTGAAGGTTAAACCAGGCATTATACCACGCTTCT 642669 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | | ||||||||| || |||||||| ||||| |||||||||||||| || || ||||| | Sbjct 642670 TCAACCAAAATATAGAGGCAAATGAACCAGAGAAGAAAATTCCTTCAACGGCAGCAAAAG 642729 Query 32803 CAATAAGTCTCTCTCCATA-ACCGGCGCT--GTCATGTATCCACTTTTGAGCCCAATCGG 32859 ||| || ||| ||| ||| | | | || ||| ||||| ||| ||||||| || | Sbjct 642730 CAACAACTCTTTCTGAATAGTCTGCCTCTTCATCACCAATCCATTTTAGAGCCCAGTCTG 642789 Query 32860 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGT 32907 |||||||||||||||| || | ||| || |||||||| || | |||| Sbjct 642790 CCTTCTTTTTTACACAGGGTAATGTTTCAATAGCATTGAATAAGTAGT 642837 >seq2942 Length=2007428 Score = 134 bits (148), Expect = 2e-26 Identities = 155/204 (76%), Gaps = 6/204 (3%) Strand=Plus/Minus Query 62992 TTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGA 63051 |||||| || || ||||| ||||| || || || |||||||| | ||||||||||| | Sbjct 1920160 TTCGAATTCTTCACCCCAGACATTTTCGAGGCCTGGACATTCCCCTGGACACATCAAGGT 1920101 Query 63052 CCACTCTCCGTCATCCTT--CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 63109 ||| | ||| | | ||| ||| ||||||||||| | |||||||||||| || || ||| Sbjct 1920100 CCAGTTTCCAT--TGCTTTCCACCCGTTTCATAAATAAATCAGGAATCCACAGGGC-ATA 1920044 Query 63110 -AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 63168 |||| |||||||| || ||||| || || || ||||||||||| | ||| | ||| | Sbjct 1920043 GAATAAATCTCTGGCTCGCTGTTCTTCTTTACCAGTATTCTTTTTTAAATCTAAAAACTC 1919984 Query 63169 CATAATATCAGAATGCCACGGTTC 63192 | || ||| | ||||| ||||| Sbjct 1919983 GAAAACATCTGCGTGCCATGGTTC 1919960 Score = 134 bits (148), Expect = 2e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 62441 TATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTT 62500 |||| || || ||||| |||||||||||||| | ||||| ||| |||||||||| | Sbjct 1921846 TATGCCCCGTCTTTCTCGGCTAGTTCACAACTGGATTCTAACGCAGCGTAATAAATATTC 1921787 Query 62501 TCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGA 62560 || |||||| |||||||| || || |||||| | || ||||||||||| | | | Sbjct 1921786 TCAAAGATCAACTTATTTAACTCCTGGGCTTCCTGACTCTCAAATGGATATCTCATTAAT 1921727 Query 62561 ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 62619 ||||| ||||||||||| ||||| ||||| | ||||| || | ||||||| | || || Sbjct 1921726 ATAAAGGCGTCTGCTAACCCTTGGACACCCAATCCGATTGGACGATGTCTCATGTTGGA 1921668 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62792 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 62851 |||| | |||||| || ||||| |||||||| ||||| || || | ||||||||||| Sbjct 1920696 TATTCCACTATCTCTGTACAAAGGTTACTACATTTGATAGTACCAAGGTTTTGTTGATTT 1920637 Query 62852 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 62911 ||| ||||||| ||| ||||| | ||| |||| |||||||| ||| |||||||| Sbjct 1920636 GATTTTCTGTTACAGCTATCTTTATATAACATGTATGGTGTACCAGTCTCAGTCTGAGAT 1920577 Query 62912 TCTATAATCGCTTTCCA 62928 ||||| || || | ||| Sbjct 1920576 TCTATTATAGCATACCA 1920560 Score = 104 bits (114), Expect = 3e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 62191 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62250 ||| || ||||||||||||| ||||| | || || |||||||||||||| | ||| | Sbjct 1922581 TACCTGGAATTCTCCAGACAGAACTCTTCTGGTATATATATTACTGGTATAGGCTTCTAT 1922522 Query 62251 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62310 || |||||||| || | || ||||| || || || || ||||| || |||| ||||| Sbjct 1922521 AGCTTCATTATTACCAAGTATCTGAGCTGTAGAGGCTGTTGGCATCGGCGCCATTAATAA 1922462 Query 62311 ACTATTTCTAAGACC 62325 ||||||||| | ||| Sbjct 1922461 ACTATTTCTTACACC 1922447 Score = 84.2 bits (92), Expect = 3e-11 Identities = 80/101 (79%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 63439 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 63498 |||| | || || | ||| | || || ||||| || |||||||| ||||||||||| || Sbjct 1918951 AAAATACCTGGATAATTGTGGTCGTCTGGTTCCAGCGTTAAATAAAGTAGGAGAAGCATG 1918892 Query 63499 AGTAAACCATTTTTCAGAAAGTAGATTGTACGTCT-CAATA 63538 |||||||||||| || || | || ||| ||||||| ||||| Sbjct 1918891 AGTAAACCATTTCTCTGATAATAAATTATACGTCTACAATA 1918851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633596603732400