Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lottia_20gigantea_20[refseq_20GCF_5F000327385.1_202012-12-20] 4,469 sequences; 359,505,668 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2153 179 4e-40 seq2942 127 2e-24 >seq2153 Length=2898250 Score = 179 bits (198), Expect = 4e-40 Identities = 173/222 (78%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 ||||||||| ||| |||| ||||||| || |||||||||||||| | || | || | Sbjct 642610 CCTCGTCTCGACTGATCAGTTCATTACTGAAGGTTAAACCAGGCATTATACCACGCTTCT 642669 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | ||||| |||||||| |||||||| ||||| ||||| || ||||| || || ||||||| Sbjct 642670 TCAACCAAAATATAGAGGCAAATGAACCAGAGAAGAAAATTCCTTCAACGGCAGCAAAAG 642729 Query 19103 CAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAG 19162 |||| | ||||||| ||| || || | || | ||||||||| || ||||| || | Sbjct 642730 CAACAACTCTTTCTGAATAGTCTGCCTCTTCATCACCAATCCATTTTAGAGCCCAGTCTG 642789 Query 19163 CCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATA 19204 |||||||||||||||| || | ||| || |||| ||| |||| Sbjct 642790 CCTTCTTTTTTACACAGGGTAATGTTTCAATAGCATTGAATA 642831 Score = 167 bits (184), Expect = 3e-36 Identities = 177/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 19345 ACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATA 19404 |||||||||||||| || || |||||||| || ||||| || || | |||||| ||| Sbjct 643481 ACCAAATTTTCATTCACAATACCATCACTGGCAGCAAAGAAAGCCAGGACATGTGAAATG 643540 Query 19405 AAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTACT 19464 || |||| ||| || | |||| | | ||||| | | | ||||||||| || || ||| Sbjct 643541 AAGTGTTGTTCTTCAGGTTTTAAAGCTTCCCAATGAATTAAATCTTTAGACAAGTCAACT 643600 Query 19465 TCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATAT 19524 |||||| | |||||||| || || || |||||||| ||||| | ||| |||||| |||| Sbjct 643601 TCTTCAGCAGTCCAAAATGATGCTTCAGCTTTTTTGTACATTTGCCAGATATCATCATAT 643660 Query 19525 TGTATAGGAAATATAACAAATCTATTTTTATTTTCT-TTAAGAATAGGTTC 19574 || ||||| ||||| |||||||||| ||||||| | || ||| ||||| Sbjct 643661 TGAATAGGGAATATTACAAATCTATGGGGATTTTCTCTCAATAAT-GGTTC 643710 Score = 116 bits (128), Expect = 4e-21 Identities = 157/214 (73%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 18775 CCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAA 18834 ||||| || | || || ||| || |||||||||| ||||||| ||||| | |||||| Sbjct 642132 CCTAAGTCGACTAATAATCTGTCAGCTACAAATTCAATATATTGCTTCATGAGATCACAG 642191 Query 18835 TTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACT 18894 ||||| || ||||||||| |||| ||||| || | |||||||||||| || | |||| Sbjct 642192 TTCATACCAATTAATTTACATGGTAAAGCATCAGTTAAAAATTCTTGTTCAATTTGTACT 642251 Query 18895 GCCTCTGATATAATA-GATACAACTCTATCTTCATTAGGAGGGTA--TAGAAGATGTTTA 18951 || || | || ||| ||| || ||| || | | || || || | |||| | Sbjct 642252 GCATCAGTAATTATACCATA-AATTCTTTC--CTGTGATAGCTTATTTACTAAATGTCTG 642308 Query 18952 AACATCAAACATGCAAAATCACAATGTAGTCCCT 18985 |||| ||||| ||||||||||||||||| |||| Sbjct 642309 TACATTAAACAGGCAAAATCACAATGTAGACCCT 642342 Score = 98.7 bits (108), Expect = 1e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 19224 ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGC 19283 |||||| | ||| | |||||| ||||| |||||||| || || ||||| || || || Sbjct 643176 ATCTTTGATATAGGTATCTATTAATAAGCTGTACATCTCACTGTGGATATTCTCCATGGC 643235 Query 19284 CATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTC 19343 | ||||| || || |||||||||||||||||||||||||| || ||| |||| ||| Sbjct 643236 AACTTGAAAACCATAGAAACATCTTGCTTCTGTTATCTGTACCTCTTTACTGAATCGTTC 643295 Query 19344 GACC 19347 ||| Sbjct 643296 AACC 643299 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 ||| ||||||||| |||||||||| | ||||| || ||||| || |||| ||| || || Sbjct 641744 CATCACTCCCATTCTTTGATATTCACCTACTCTCTTCTCAAAAAAGTTAGATTTCCCTTC 641803 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTT 18751 | ||||| |||||||||||||||| || |||| Sbjct 641804 AAGGGATATTAATTCCATAAAATCAAAAGGGTTTT 641838 >seq2942 Length=2007428 Score = 127 bits (140), Expect = 2e-24 Identities = 108/133 (81%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 || ||||||||||| || ||||| | | ||||||||||||| ||||| | |||||||| | Sbjct 1922577 TGGAATTCTCCAGACAGAACTCTTCTGGTATATATATTACTGGTATAGGCTTCTATAGCT 1922518 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 |||||||| |||| || ||||| || || ||||| ||||| | || | |||||| ||| Sbjct 1922517 TCATTATTACCAAGTATCTGAGCTGTAGAGGCTGTTGGCATCGGCGCCATTAATAAACTA 1922458 Query 47448 TTTCTTACTCCAT 47460 |||||||| |||| Sbjct 1922457 TTTCTTACACCAT 1922445 Score = 111 bits (122), Expect = 2e-19 Identities = 88/106 (83%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 ||||| ||||||||||||| || ||||||||| |||| ||||||| | ||||||||||| Sbjct 1923530 TCCATGCATAGAAATGCATGCTGGTTAATTTACCATAATTAGGTTCCGCAATATGAATAT 1923471 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCAT 47155 | | || ||||||||||||||| | || |||| ||| || ||||| Sbjct 1923470 TCAACGACTGACTCTGATCAATATAAGCTCCTCGATCGGCGGCCAT 1923425 Score = 105 bits (116), Expect = 8e-18 Identities = 167/237 (70%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 48116 ATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACA 48175 ||||| || || ||||| || || | ||||| || | || |||||||| ||||| Sbjct 1920169 ATATAGTTTTTCGAATTCTTCACCCCAGACATTTTCGAGGCCTGGACATTCCCCTGGACA 1920110 Query 48176 CATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAG 48235 |||||| | ||| | ||| ||| || | ||||||||| ||| || ||||| || Sbjct 1920109 CATCAAGGTCCAGTTTCCATTGCTTTCCACCCGTTTCATAAATAAATCAGGAATCCACAG 1920050 Query 48236 AGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAA 48294 || ||| |||||||| || | || ||||||| || ||| ||||| |||| | || | Sbjct 1920049 GGC-ATAGAATAAATCTCTGGCTCGCTGTTCTTCTTTACCAGTATTCTTTTTTAAATCTA 1919991 Query 48295 GAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTC 48351 ||| || | | ||| || ||||||||||| | ||| || || | | | ||||||| Sbjct 1919990 AAAACTCGAAAACATCTGCGTGCCATGGTTCAATATAGATAGCAAATGCTCCTGGTC 1919934 Score = 91.5 bits (100), Expect = 2e-13 Identities = 126/174 (72%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 48916 CACTAAATAttttttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATA 48975 ||||||| | ||||| || |||||||| | |||||| | || ||||||||||| | || Sbjct 1917105 CACTAAAGACTTTTTGGGTCTCTTTATGTAAATTAGACACAGCAATTCTAGCAGCGAGTA 1917046 Query 48976 TAGCATAATCTGGATGAATTGTTGTACAT-GTACTAGATATTTCTGCTGCTAATATATCT 49034 |||| || || ||||| | ||||| ||| ||| || | | || || |||| | ||| Sbjct 1917045 TAGCGTACTCGGGATGTTTGGTTGT-CATGGTAGCAGCTGTCTCGGCAGCTAGATTGTCT 1916987 Query 49035 AATTCTTTAGTAGTTACACCTGTATATATTCCTTGAATAACTTTCATTGCTATA 49088 |||||| ||||| ||||| ||| | || | |||||||| | || |||| Sbjct 1916986 AATTCTACTGTAGTAACACCCTGATAGAGACCATTGATAACTTTTAATGTTATA 1916933 Score = 82.4 bits (90), Expect = 9e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 48354 TTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACA 48413 || || || || ||||||| |||||||| |||||||||||||||| ||||||||| | Sbjct 1919802 TTGTTTCCCCCCTGATCTACGTATCTGGCTGTATTGTTATAAACTCGTAACATTGGTATT 1919743 Query 48414 ATACCATTTGATATACCATTGGT 48436 | |||||| || |||||||| || Sbjct 1919742 AAACCATTAGACATACCATTAGT 1919720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562077399197160