Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lottia_20gigantea_20[refseq_20GCF_5F000327385.1_202012-12-20] 4,469 sequences; 359,505,668 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3174 93.3 1e-13 seq2153 89.7 2e-12 seq131 89.7 2e-12 >seq3174 Length=1828172 Score = 93.3 bits (102), Expect = 1e-13 Identities = 186/275 (68%), Gaps = 7/275 (3%) Strand=Plus/Plus Query 289091 ATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGG 289150 |||||| |||||| | | | ||| | |||||| |||||||| |||||| ||| | | Sbjct 1732755 ATAATTGTCTTACTCTAGCAGATCCTACTCCAACAAACATTTCTTGAAATTCTGAACCAG 1732814 Query 289151 ATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTAC 289210 | || ||| |||| ||||| ||||| || ||| || | || | | || |||| Sbjct 1732815 ACACAGTAATAAATGGAACATTAGCTTCTCCAGCTGTAGCTTTAGCTAATAAAGTTTTAC 1732874 Query 289211 CTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTAT 289270 | || ||||||||||| ||| | | | || || |||| ||| || || | ||| Sbjct 1732875 CAGTACCAGGTGGTCCAGTTAACATAGCACCTTTAGGTATTTTAGCTCCTAAATCACTAT 1732934 Query 289271 ATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCAC 289330 | | | |||| |||||||||| | |||| |||| || ||| ||| || || || | Sbjct 1732935 ACTGTTTAGGGTTCTTTAAAAAATTGACAAATTCCATAATTTCTACTTTGGCTTCTTCGC 1732994 Query 289331 ATCCTGCTACATC-----AGCAAAAGTAATATTAA 289360 | || || ||||| || ||||| ||||||| Sbjct 1732995 AACCAGCAACATCTCTGGAGGAAAAG--ATATTAA 1733027 >seq2153 Length=2898250 Score = 89.7 bits (98), Expect = 2e-12 Identities = 143/203 (70%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 133071 ATAGGTTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGC 133130 |||| ||||| || ||||| ||| | | || || || ||||| ||||| |||||| Sbjct 643685 ATAGATTTGTAATATTCCCTATTCAATATGATGATATCTGGCAAATGTACAAAAAAGCTG 643626 Query 133131 AAGATTTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGACCCAGCCCACTGGGAAG 133190 ||| | |||||||||| | ||||| || || || ||||| | || ||||||| Sbjct 643625 AAGCATCATTTTGGACTGCTGAAGAAGTTGACTTGTCTAAAGATTTAATTCATTGGGAAG 643566 Query 133191 CCCTTACTGGGGATGAAAAACATTTTATTTCT-ATGATTTTAGCGTTTTTTGCTGCGAGT 133249 | | | || ||| |||| || ||||| ||| | | || || |||||||| ||| Sbjct 643565 CTTTAAAACCTGAAGAACAACACTTCATTTCACATG-TCCTGGCTTTCTTTGCTGCCAGT 643507 Query 133250 GATGGTATTGTTCTTGAAAATTT 133272 ||||||||||| ||||||||| Sbjct 643506 GATGGTATTGTGAATGAAAATTT 643484 >seq131 Length=902620 Score = 89.7 bits (98), Expect = 2e-12 Identities = 128/176 (73%), Gaps = 6/176 (3%) Strand=Plus/Plus Query 303982 GTTAAATTCTTGGCGAT--TTTCAGCGGAACGCCTAACTCGCT-AATGGATAAGTTGGGG 304038 |||||||||| ||| || ||| || | || || |||| | | ||| |||||| || Sbjct 541078 GTTAAATTCTGGGCAATACTTTTAG--GTACACC-AACTTGATCAATACGTAAGTTAGGA 541134 Query 304039 TCAGGTGTAATTACAGAGCGAGCACTAAAATCAACACGCTTACCCATAAGATTACCCCTA 304098 || || || || |||| ||| || ||||||||||| |||||||| | |||||| | Sbjct 541135 TCTGGGGTGATGACAGTACGACCAGAGAAATCAACACGTTTACCCATCAAATTACCACGC 541194 Query 304099 ACACGACCGCCCTTACCGTTTAGCCTATCCTTGATTGCCTTCAGGGGGCGACCCGA 304154 |||||||| | ||||| |||| ||| | || | || |||||| || ||||| || Sbjct 541195 ACACGACCTTCTTTACCCTTTAACCTCTGTTTTACTGACTTCAGTGGTCGACCAGA 541250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471733325104053