Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lottia_20gigantea_20[refseq_20GCF_5F000327385.1_202012-12-20] 4,469 sequences; 359,505,668 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq2445 89.7 4e-13 seq3036 82.4 6e-11 seq1919 82.4 6e-11 >seq2445 Length=2603117 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| ||||| || || |||||||| ||| | ||| || | | Sbjct 1078501 ATGCAGATCTTCGTCAAGACTTTGACTGGTAAAACCATCACCCTTGAAGTTGAACCAGCT 1078442 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | || ||| || ||| ||||||||||| | ||| || || Sbjct 1078441 GATACCATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCCCCAGACCAA 1078382 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || ||| | || | ||| |||||||| |||| || | | |||| | | ||||||||| Sbjct 1078381 CAAAGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACACTATCAGACTACAAC 1078322 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || ||||| || || || | || |||| || ||||| ||||| || Sbjct 1078321 ATCCAAAAAGAATCCACTCTCCATCTGGTATTAAGATTACGAGGAGG 1078275 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| ||||| || || |||||||| ||| | ||| || | | Sbjct 1078957 ATGCAGATCTTCGTCAAGACTTTGACTGGTAAAACCATCACCCTTGAAGTTGAACCAGCT 1078898 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | || ||| || ||| ||||||||||| | ||| ||||| Sbjct 1078897 GATACCATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCCCCAGATCAA 1078838 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || || | || | ||| |||||||| |||| || | | |||| | | ||||||||| Sbjct 1078837 CAACGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACACTATCAGACTACAAC 1078778 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || ||||| || || || | || |||| || ||||| ||||| || Sbjct 1078777 ATCCAAAAAGAATCCACTCTCCATCTGGTATTAAGATTACGAGGAGG 1078731 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| ||||| || || |||||||| ||| | ||| || | | Sbjct 1078273 ATGCAGATCTTCGTCAAGACTTTGACTGGTAAAACCATCACCCTTGAAGTTGAACCAGCT 1078214 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | || ||| || ||| ||||||||||| | ||| || || Sbjct 1078213 GATACCATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCCCCAGACCAA 1078154 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || ||| | || | ||| |||||||| |||| || | | |||| | | ||||||||| Sbjct 1078153 CAAAGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACACTATCAGACTACAAC 1078094 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || ||||| || || || | || | || || ||||| ||||| || Sbjct 1078093 ATCCAAAAAGAATCCACTCTCCATCTTGTATTAAGATTACGAGGAGG 1078047 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || || ||||| || || || || |||||||| ||| | || || | | Sbjct 1150092 AATGCAGATCTTCGTCAAGACATTGACTGGTAAAACCATCACCTTAGAGGTAGAACCAGC 1150033 Query 107615 CGATACTGTCGGCCAGGT-AAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 ||||| | | | || ||||| ||| ||| || |||||||| | ||| || | Sbjct 1150032 TGATACCATTGAAAATGTTAAAACTAAA-ATTCAAGACAAAGAAGGTATTCCCCCAGACC 1149974 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 | || ||| | || | ||| |||||||| |||| || | | |||| | | ||||||| Sbjct 1149973 AACAAAGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACACTTTCAGACTACA 1149914 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 |||| ||||| || || || | || | || |||||||| ||||| || Sbjct 1149913 ACATCCAAAAAGAATCAACTCTCCATCTTGTATTGAGATTACGAGGAGG 1149865 >seq3036 Length=1877736 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 107550 TTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG 107609 || |||||||| || ||||| || ||| | || || || ||||| ||| ||||| || Sbjct 1772390 TTGAAAATGCAGATCTTTGTTAAGACTCTCACTGGAAAGACCATCACCCTCGAAGTAGAA 1772331 Query 107610 GCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTG 107669 | | ||||| | | | |||||| ||||| ||||| ||||| | ||| Sbjct 1772330 CCAGCTGATACCATTGAAAATGTAAAAGCTAAGATCCAAGATAAGGAAGGTATTCCCCCA 1772271 Query 107670 GATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGAC 107729 |||||||| | ||||| | ||| |||||||| || || || | || ||| | | || Sbjct 1772270 GATCAGCAACGTCTTATCTTTGCTGGTAAACAACTAGAAGATGGCAGAACCCTCTCTGAT 1772211 Query 107730 TACAACATTCAAAAGGAGTCTAC 107752 ||||||||||| || || || || Sbjct 1772210 TACAACATTCAGAAAGAATCAAC 1772188 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 107550 TTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG 107609 || |||||||| || ||||| || ||| | || || || ||||| ||| ||||| || Sbjct 1839508 TTGAAAATGCAGATCTTTGTTAAGACTCTCACTGGAAAGACCATCACCCTCGAAGTAGAA 1839449 Query 107610 GCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTG 107669 | | ||||| | | | |||||| ||||| ||||| ||||| | ||| Sbjct 1839448 CCAGCTGATACCATTGAAAATGTAAAAGCTAAGATCCAAGATAAGGAAGGTATTCCCCCA 1839389 Query 107670 GATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGAC 107729 |||||||| | ||||| | ||| |||||||| || || || | || ||| | | || Sbjct 1839388 GATCAGCAACGTCTTATCTTTGCTGGTAAACAACTAGAAGATGGCAGAACCCTCTCTGAT 1839329 Query 107730 TACAACATTCAAAAGGAGTCTAC 107752 ||||||||||| || || || || Sbjct 1839328 TACAACATTCAGAAAGAATCAAC 1839306 >seq1919 Length=159031 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||| || || |||||||| || || || || ||||| ||| | || || | Sbjct 44440 AAGATGCAGATCTTCGTCAAAACATTGACTGGTAAGACCATCACCTTAGAGGTCGAACCA 44381 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 | ||||| | | | || ||| |||||| |||||||||||| | || ||| Sbjct 44380 GCTGATACCATAGAAAATGTCAAAGCCAAGATTCAAGATAAAGAAGGCATTCCACCAGAT 44321 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 || ||| || | |||| ||| || || || || || || | || ||| | |||| ||| Sbjct 44320 CAACAGCGATTGATTTTTGCTGGAAAGCAACTTGAAGATGGCAGAACTCTCTCGGATTAC 44261 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| || || || || || | || |||| |||||||| || || || Sbjct 44260 AACATCCAGAAAGAATCGACCCTCCATTTGGTATTGAGATTACGTGGAGG 44211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398855074801141