Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lottia_20gigantea_20[refseq_20GCF_5F000327385.1_202012-12-20] 4,469 sequences; 359,505,668 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq1613 143 5e-29 seq3007 129 1e-24 seq3036 96.9 6e-15 >seq1613 Length=3625785 Score = 143 bits (158), Expect = 5e-29 Identities = 249/361 (69%), Gaps = 6/361 (2%) Strand=Plus/Minus Query 58312 AGGCTATAGTTATGTTTGTCAACCTATAGATTATTCAGATAACGTTTACGAGGTTAGGAT 58371 ||| ||||||||| | || ||||| | |||| || || | | | || | || || Sbjct 2860075 AGGATATAGTTATTTGTGCCAACCAGTGAGTTATACATATGATCATAATGAAATGAGAAT 2860016 Query 58372 AGCCAGAGCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTT 58431 ||||| ||||| ||||||| ||| | ||||||| | |||| ||||| || ||||| Sbjct 2860015 AGCCAAGGCATTGTGGTGGTTTTATTTCTCTAAAGTGCTAGAGATGTTAGACACTGTGTT 2859956 Query 58432 TTTCAT---ACTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTT 58488 ||| || || || |||||| ||| || ||||| ||||| || || || |||||| Sbjct 2859955 TTTTATTTTACGTAAGAAAAA---TAACCAAGTTAGTTTTCTTCATGTTTACCATCATGC 2859899 Query 58489 TACTATGTTTACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCAGGCATTTTT 58548 || |||||| || | | ||| | || || |||||| | |||||||||||| | || || Sbjct 2859898 AACCATGTTTCCTATTTGGTGGATTGGAATCAAATGGGTAGCAGGAGGTCAGTCTTTCTT 2859839 Query 58549 CGGCGCTCAGTTGAATTCTTTTATCCATGTTATTATGTATAGTTATTATGGTATGGCGGC 58608 || || | |||| || || || ||||| | ||||| | || || || | | || Sbjct 2859838 TGGGGCCATGATGAACTCCTTCATACATGTATTGATGTACACCTACTACGGAGTTTCTGC 2859779 Query 58609 GTGTGGACATATGTTTAAAAAGTATTTATGGTGGAAGCGTTACCTTACTATAATGCAATT 58668 | || | ||| | ||||||||||||||||| | ||||| || | ||| ||| | Sbjct 2859778 CTTAGGGCCACAATTTCAGAAGTATTTATGGTGGAAAAGATACCTGACAAAAATCCAACT 2859719 Query 58669 G 58669 | Sbjct 2859718 G 2859718 >seq3007 Length=1849679 Score = 129 bits (142), Expect = 1e-24 Identities = 117/145 (81%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 183196 GTAGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCTATA 183255 |||||||||||||||||||| || ||| |||| ||| || |||||||||||||||||| Sbjct 1445232 GTAGGTTGTATGTGGTCTATATGTGGAATACATGATCAAGGTTGGAAAGAAAGACCTATA 1445173 Query 183256 TTTGGAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGATGTTGCTACA 183315 ||||| || |||||||| ||||||||| | | | ||||| ||||||||||| ||| | Sbjct 1445172 TTTGGTAAAATAAGATACATGAATTATCAAGGATGTAAGAGAAAATTTGATGTAGCTGCT 1445113 Query 183316 TTTAT-ACAGAA-ATACAGTTAAGA 183338 ||| | | | || ||| ||| |||| Sbjct 1445112 TTTGTGAGAAAATATAAAGTGAAGA 1445088 >seq3036 Length=1877736 Score = 96.9 bits (106), Expect = 6e-15 Identities = 107/145 (74%), Gaps = 11/145 (8%) Strand=Plus/Plus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 ||||| |||| ||||| || || |||||||| || ||||| | ||||||| Sbjct 1771045 AGAGTTGATTCTTTCTGAATGTTGTAATCAGAGAGGGTTCTGCCATCTTCTAGTTGTTTA 1771104 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 ||||||| || | ||| ||| |||| | ||| ||||||||||||| ||||| ||| Sbjct 1771105 CCAGCAAAGATAAGACGTTGCTGATCTGGGGGAATTCCTTCCTTATCTTGGATCTTAGCT 1771164 Query 81753 TTTATATTTTCAATCGTATTACCTG 81777 |||| ||||||||| |||| | ||| Sbjct 1771165 TTTACATTTTCAATGGTATCAGCTG 1771189 Score = 93.3 bits (102), Expect = 8e-14 Identities = 102/138 (74%), Gaps = 11/138 (8%) Strand=Plus/Plus Query 81651 ATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA-----------CAA 81699 |||| ||||| || || |||||||| || ||||| | ||||||| ||| Sbjct 1770824 ATTCTTTCTGAATGTTGTAATCAGAGAGGGTTCTGCCATCTTCTAGTTGTTTACCAGCAA 1770883 Query 81700 AGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATAT 81759 |||| || | ||| ||| |||| | ||| ||||||||||||| ||||| ||||||| || Sbjct 1770884 AGATAAGACGTTGCTGATCTGGGGGAATTCCTTCCTTATCTTGGATCTTAGCTTTTACAT 1770943 Query 81760 TTTCAATCGTATTACCTG 81777 ||||||| |||| | ||| Sbjct 1770944 TTTCAATGGTATCAGCTG 1770961 Score = 93.3 bits (102), Expect = 8e-14 Identities = 102/138 (74%), Gaps = 11/138 (8%) Strand=Plus/Plus Query 81651 ATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA-----------CAA 81699 |||| ||||| || || |||||||| || ||||| | ||||||| ||| Sbjct 1771280 ATTCTTTCTGAATGTTGTAATCAGAGAGGGTTCTGCCATCTTCTAGTTGTTTACCAGCAA 1771339 Query 81700 AGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATAT 81759 |||| || | ||| ||| |||| | ||| ||||||||||||| ||||| ||||||| || Sbjct 1771340 AGATAAGACGTTGCTGATCTGGGGGAATTCCTTCCTTATCTTGGATCTTAGCTTTTACAT 1771399 Query 81760 TTTCAATCGTATTACCTG 81777 ||||||| |||| | ||| Sbjct 1771400 TTTCAATGGTATCAGCTG 1771417 Score = 93.3 bits (102), Expect = 8e-14 Identities = 102/138 (74%), Gaps = 11/138 (8%) Strand=Plus/Plus Query 81651 ATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA-----------CAA 81699 |||| ||||| || || |||||||| || ||||| | ||||||| ||| Sbjct 1771508 ATTCTTTCTGAATGTTGTAATCAGAGAGGGTTCTGCCATCTTCTAGTTGTTTACCAGCAA 1771567 Query 81700 AGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATAT 81759 |||| || | ||| ||| |||| | ||| ||||||||||||| ||||| ||||||| || Sbjct 1771568 AGATAAGACGTTGCTGATCTGGGGGAATTCCTTCCTTATCTTGGATCTTAGCTTTTACAT 1771627 Query 81760 TTTCAATCGTATTACCTG 81777 ||||||| |||| | ||| Sbjct 1771628 TTTCAATGGTATCAGCTG 1771645 Score = 93.3 bits (102), Expect = 8e-14 Identities = 102/138 (74%), Gaps = 11/138 (8%) Strand=Plus/Plus Query 81651 ATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA-----------CAA 81699 |||| ||||| || || |||||||| || ||||| | ||||||| ||| Sbjct 1771736 ATTCTTTCTGGATGTTGTAATCAGAGAGGGTTCTGCCATCTTCTAGTTGTTTACCAGCAA 1771795 Query 81700 AGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATAT 81759 |||| || | ||| ||| |||| | ||| ||||||||||||| ||||| ||||||| || Sbjct 1771796 AGATAAGACGTTGCTGATCTGGGGGAATTCCTTCCTTATCTTGGATCTTAGCTTTTACAT 1771855 Query 81760 TTTCAATCGTATTACCTG 81777 ||||||| |||| | ||| Sbjct 1771856 TTTCAATGGTATCAGCTG 1771873 Score = 93.3 bits (102), Expect = 8e-14 Identities = 102/138 (74%), Gaps = 11/138 (8%) Strand=Plus/Plus Query 81651 ATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA-----------CAA 81699 |||| ||||| || || |||||||| || ||||| | ||||||| ||| Sbjct 1771964 ATTCTTTCTGGATGTTGTAATCAGAGAGGGTTCTGCCATCTTCTAGTTGTTTACCAGCAA 1772023 Query 81700 AGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATAT 81759 |||| || | ||| ||| |||| | ||| ||||||||||||| ||||| ||||||| || Sbjct 1772024 AGATAAGACGTTGCTGATCTGGGGGAATTCCTTCCTTATCTTGGATCTTAGCTTTTACAT 1772083 Query 81760 TTTCAATCGTATTACCTG 81777 ||||||| |||| | ||| Sbjct 1772084 TTTCAATGGTATCAGCTG 1772101 Score = 93.3 bits (102), Expect = 8e-14 Identities = 102/138 (74%), Gaps = 11/138 (8%) Strand=Plus/Plus Query 81651 ATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA-----------CAA 81699 |||| ||||| || || |||||||| || ||||| | ||||||| ||| Sbjct 1839082 ATTCTTTCTGGATGTTGTAATCAGAGAGGGTTCTGCCATCTTCTAGTTGTTTACCAGCAA 1839141 Query 81700 AGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATAT 81759 |||| || | ||| ||| |||| | ||| ||||||||||||| ||||| ||||||| || Sbjct 1839142 AGATAAGACGTTGCTGATCTGGGGGAATTCCTTCCTTATCTTGGATCTTAGCTTTTACAT 1839201 Query 81760 TTTCAATCGTATTACCTG 81777 ||||||| |||| | ||| Sbjct 1839202 TTTCAATGGTATCAGCTG 1839219 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/145 (73%), Gaps = 11/145 (8%) Strand=Plus/Plus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 ||||| |||| ||||| || || |||||||| || ||||| | ||||||| Sbjct 1838619 AGAGTTGATTCTTTCTGAATGTTGTAATCAGAGAGGGTTCTGCCATCTTCTAGTTGTTTA 1838678 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 ||||||| || | ||| ||| |||| | ||| ||||||||||||| ||||| ||| Sbjct 1838679 CCAGCAAAGATAAGACGTTGCTGATCTGGGGGAATTCCTTCCTTATCTTGGATCTTAGCT 1838738 Query 81753 TTTATATTTTCAATCGTATTACCTG 81777 |||| ||||||||| || | | ||| Sbjct 1838739 TTTACATTTTCAATGGTGTCAGCTG 1838763 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/138 (73%), Gaps = 11/138 (8%) Strand=Plus/Plus Query 81651 ATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA-----------CAA 81699 |||| ||||| || || |||||||| || ||||| | ||||||| ||| Sbjct 1772192 ATTCTTTCTGAATGTTGTAATCAGAGAGGGTTCTGCCATCTTCTAGTTGTTTACCAGCAA 1772251 Query 81700 AGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATAT 81759 |||| || | ||| ||| |||| | || ||||||||||||| ||||| ||||||| || Sbjct 1772252 AGATAAGACGTTGCTGATCTGGGGGAATACCTTCCTTATCTTGGATCTTAGCTTTTACAT 1772311 Query 81760 TTTCAATCGTATTACCTG 81777 ||||||| |||| | ||| Sbjct 1772312 TTTCAATGGTATCAGCTG 1772329 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/138 (73%), Gaps = 11/138 (8%) Strand=Plus/Plus Query 81651 ATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA-----------CAA 81699 |||| ||||| || || |||||||| || ||||| | ||||||| ||| Sbjct 1838854 ATTCTTTCTGAATGTTGTAATCAGAGAGGGTTCTGCCATCTTCTAGTTGTTTACCAGCAA 1838913 Query 81700 AGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATAT 81759 |||| || | ||| ||| |||| | || ||||||||||||| ||||| ||||||| || Sbjct 1838914 AGATAAGACGTTGCTGATCTGGGGGAATACCTTCCTTATCTTGGATCTTAGCTTTTACAT 1838973 Query 81760 TTTCAATCGTATTACCTG 81777 ||||||| |||| | ||| Sbjct 1838974 TTTCAATGGTATCAGCTG 1838991 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/138 (73%), Gaps = 11/138 (8%) Strand=Plus/Plus Query 81651 ATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA-----------CAA 81699 |||| ||||| || || |||||||| || ||||| | ||||||| ||| Sbjct 1839310 ATTCTTTCTGAATGTTGTAATCAGAGAGGGTTCTGCCATCTTCTAGTTGTTTACCAGCAA 1839369 Query 81700 AGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATAT 81759 |||| || | ||| ||| |||| | || ||||||||||||| ||||| ||||||| || Sbjct 1839370 AGATAAGACGTTGCTGATCTGGGGGAATACCTTCCTTATCTTGGATCTTAGCTTTTACAT 1839429 Query 81760 TTTCAATCGTATTACCTG 81777 ||||||| |||| | ||| Sbjct 1839430 TTTCAATGGTATCAGCTG 1839447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903360733191840