Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lottia_20gigantea_20[refseq_20GCF_5F000327385.1_202012-12-20] 4,469 sequences; 359,505,668 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq2942 95.1 3e-14 seq2153 95.1 3e-14 seq4343 93.3 1e-13 >seq2942 Length=2007428 Score = 95.1 bits (104), Expect = 3e-14 Identities = 128/176 (73%), Gaps = 8/176 (5%) Strand=Plus/Plus Query 110755 CATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTA 110814 |||||||||||||| | ||||| ||||| ||||| | || || || ||||| || || Sbjct 1919943 CATTTGCTATCTATATTGAACCATGGCACGCAGATGTTTTCGAGTTTTTAGA--TT--TA 1919998 Query 110815 AAAATCAA----GGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATT 110870 |||| || || |||||||| |||| | |||||||| ||||| |||||||| Sbjct 1919999 AAAAAGAATACTGGTAAAGAAGAACAGCGAGCCAGAGATTTATTCTATGCCCTGTGGATT 1920058 Query 110871 TCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCC 110926 | |||||||| |||||||| || || ||||| | ||| | | |||||||| Sbjct 1920059 CCTGATTTATTTATGAAACGGGTGGAAAGCAATGGAAACTGGACCTTGATGTGTCC 1920114 >seq2153 Length=2898250 Score = 95.1 bits (104), Expect = 3e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 131798 AAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCTACA 131857 |||||||| ||||| |||||| | ||||||||| ||||| || | | ||| | Sbjct 642799 AAAAAGAAGGCAGACTGGGCTCTAAAATGGATTGGTGATGAAGAGGCAGACTATTCAGAA 642740 Query 131858 AGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATC 131917 ||| |||| ||||||||| |||||||| || ||||| || ||| | || |||| Sbjct 642739 AGAGTTGTTGCTTTTGCTGCCGTTGAAGGAATTTTCTTCTCTGGTTCATTTGCCTCTATA 642680 Query 131918 TTTTGGCTTAAGAAGCGTGGATTGATGCCTGG 131949 |||||| | ||||||||||| | |||||||| Sbjct 642679 TTTTGGTTGAAGAAGCGTGGTATAATGCCTGG 642648 >seq4343 Length=883691 Score = 93.3 bits (102), Expect = 1e-13 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 279055 TAAATTATATGGTATTCCAAAACTTGATGATGCAAACTGGGCTGGAGGTCGTAAATCTCA 279114 ||||||| | || || || ||| | || ||||| ||| || ||| | || ||||| Sbjct 380702 TAAATTAAAAGGAATACCGAAATTAGACGATGCTAACAATGCCGGAACGAGAAACTCTCA 380761 Query 279115 AGAATGTGCTTTATTTCTTACTGAGGGAGATTCTGCTGCTACATTTGCGATTGCTGGTTT 279174 |||| | || |||| || ||||||||||| ||| | || || | || ||||| Sbjct 380762 GTCATGTACGTTGATTCTAACGGAGGGAGATTCAGCTAAATCTTTAGCTGTGGCAGGTTT 380821 Query 279175 ATCTGTTATTGGTCGTGATAAATATGGCGTATTTCCTTTAAGAGGTAAAGTAATTAATGC 279234 | ||||||||| |||||||||| ||| || || || ||| |||||||| | | || | Sbjct 380822 AGGTGTTATTGGACGTGATAAATTTGGAGTGTTCCCATTACGAGGTAAACTTCTCAACGT 380881 Query 279235 TCGTGA 279240 |||||| Sbjct 380882 TCGTGA 380887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186744844211709