Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lottia_20gigantea_20[refseq_20GCF_5F000327385.1_202012-12-20] 4,469 sequences; 359,505,668 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2153 174 1e-38 >seq2153 Length=2898250 Score = 174 bits (192), Expect = 1e-38 Identities = 170/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 43684 AGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTA 43743 ||||||||| ||| ||||| | || || ||||||||| |||| || ||||||||||| Sbjct 643696 AGAAAATCCCCATAGATTTGTAATATTCCCTATTCAATATGATGATATCTGGCAAATGTA 643637 Query 43744 CAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGC 43803 ||||||||| | || ||||||||||| || ||||||||||| ||| ||||||| ||| Sbjct 643636 CAAAAAAGCTGAAGCATCATTTTGGACTGCTGAAGAAGTTGACTTGTCTAAAGATTTAAT 643577 Query 43804 ACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTT 43863 |||||| || |||||||| ||||| |||| || || || || |||| || || Sbjct 643576 TCATTGGGAAGCTTTAAAACCTGAAGAACAACACTTCATTTCACATGTCCTGGCTTTCTT 643517 Query 43864 TGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAG 43902 |||||| || || || || || |||||||||||||| || Sbjct 643516 TGCTGCCAGTGATGGTATTGTGAATGAAAATTTGGTAAG 643478 Score = 102 bits (112), Expect = 6e-17 Identities = 160/223 (72%), Gaps = 7/223 (3%) Strand=Plus/Minus Query 44039 TTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAA 44097 || || ||||| || |||||| |||| || | | ||| | || ||||||||||| || || Sbjct 642832 TTATTCAATGCTATTGAAACATTACCCTGTG-TAAAAAAGAAGGCAGACTGGGCTCTAAA 642774 Query 44098 ATGGATAAAT--TCAAATG--ATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGG 44153 |||||| | | || | | || || |||| || |||| || ||||| | || | Sbjct 642773 ATGGATTGGTGATGAAGAGGCAGACTATTC-AGAAAGAGTTGTTGCTTTTGCTGCCGTTG 642715 Query 44154 AAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGA 44213 |||| |||||||| || || || ||||| | ||||||||||| ||||| || ||| | | Sbjct 642714 AAGGAATTTTCTTCTCTGGTTCATTTGCCTCTATATTTTGGTTGAAGAAGCGTGGTATAA 642655 Query 44214 TGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGA 44256 ||||||| || || || ||||| | || ||||| || || Sbjct 642654 TGCCTGGTTTAACCTTCAGTAATGAACTGATCAGTCGAGACGA 642612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397434352186345