Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lottia_20gigantea_20[refseq_20GCF_5F000327385.1_202012-12-20] 4,469 sequences; 359,505,668 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2942 136 5e-27 seq2153 136 5e-27 >seq2942 Length=2007428 Score = 136 bits (150), Expect = 5e-27 Identities = 174/237 (73%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 77915 ATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCA 77974 |||||| ||| ||||| || ||||| |||| || | || || ||||| ||| || Sbjct 1920169 ATATAGTTTTTCGAATTCTTCACCCCAGACATTTTCGAGGCCTGGACATTCCCCTGGACA 1920110 Query 77975 CATCAATGACCAGTCACCATCTTCCTTA-ACTCGTTTCATAAAGAGATCAGGTATCCATA 78033 |||||| | ||||| |||| | | || || ||||||||||| | |||||| ||||| | Sbjct 1920109 CATCAAGGTCCAGTTTCCAT-TGCTTTCCACCCGTTTCATAAATAAATCAGGAATCCACA 1920051 Query 78034 GAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGA 78093 | ||| |||| ||||| || || |||||||| || || ||||||||||| | ||| | Sbjct 1920050 GGGCATAGAATAAATCTCTGGCTCGCTGTTCTTCTTTACCAGTATTCTTTTTTAAATCTA 1919991 Query 78094 GAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTC 78150 |||||| | || ||| | ||||||||||| | ||| || || | |||| |||| Sbjct 1919990 AAAACTCGAAAACATCTGCGTGCCATGGTTCAATATAGATAGCAAATGCTCCTGGTC 1919934 Score = 118 bits (130), Expect = 1e-21 Identities = 107/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 || ||||||||||||| ||||| | || || |||||||||||||| | ||| | || | Sbjct 1922577 TGGAATTCTCCAGACAGAACTCTTCTGGTATATATATTACTGGTATAGGCTTCTATAGCT 1922518 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| || || | || ||||| ||||| || |||||||| || |||| ||||||||| Sbjct 1922517 TCATTATTACCAAGTATCTGAGCTGTAGAGGCTGTTGGCATCGGCGCCATTAATAAACTA 1922458 Query 77247 TTTCTGAGACCATGT 77261 ||||| | ||||||| Sbjct 1922457 TTTCTTACACCATGT 1922443 Score = 114 bits (126), Expect = 2e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 ||||| | |||||||||||||| || | ||| |||| |||| || || |||||||||| Sbjct 1923530 TCCATGCATAGAAATGCATGCTGGTTAATTTACCATAATTAGGTTCCGCAATATGAATAT 1923471 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 ||| ||||||||| ||||| || ||||||||| ||| || ||||| || || | || | Sbjct 1923470 TCAACGACTGACTCTGATCAATATAAGCTCCTCGATCGGCGGCCATCTTGATCACAGTTT 1923411 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTG 76994 |||| |||||||| | |||||| Sbjct 1923410 TTTGGCTGATTTCCCACGTTGTTTTG 1923385 Score = 95.1 bits (104), Expect = 2e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 77355 GATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAAT 77414 || || || || ||| ||| | || ||| | || |||||||||||||| | ||| || Sbjct 1921864 GAACCTTTGTAAGTTGAATATGCCCCGTCTTTCTCGGCTAGTTCACAACTGGATTCTAAC 1921805 Query 77415 GCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCA 77474 || |||||||||| | || || ||| |||||| | || || ||||| ||| ||| Sbjct 1921804 GCAGCGTAATAAATATTCTCAAAGATCAACTTATTTAACTCCTGGGCTTCCTGACTCTCA 1921745 Query 77475 AACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGT 77534 || ||||| | | |||||||| |||||||| || || || || | || || || Sbjct 1921744 AATGGATATCTCATTAATATAAAGGCGTCTGCTAACCCTTGGACACCCAATCCGATTGGA 1921685 Query 77535 CTATGTCTCTTATTGGA 77551 | ||||||| | ||||| Sbjct 1921684 CGATGTCTCATGTTGGA 1921668 >seq2153 Length=2898250 Score = 136 bits (150), Expect = 5e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 48523 CCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAA 48582 ||||||| ||||| || || |||||||| |||||||| || || | |||||| ||| | Sbjct 643482 CCAAATTTTCATTCACAATACCATCACTGGCAGCAAAGAAAGCCAGGACATGTGAAATGA 643541 Query 48583 AATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTT 48642 | | || ||| | | | | | ||| | | | | |||||| || | || |||| Sbjct 643542 AGTGTTGTTCTTCAGGTTTTAAAGCTTCCCAATGAATTAAATCTTTAGACAAGTCAACTT 643601 Query 48643 CTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATT 48702 ||||||| |||||||||||||| || |||||||| ||||| | ||| |||||| |||| Sbjct 643602 CTTCAGCAGTCCAAAATGATGCTTCAGCTTTTTTGTACATTTGCCAGATATCATCATATT 643661 Query 48703 GGATTGGGAAAATAACAAATCTATTTGGATTTT 48735 | || ||||| || |||||||||| ||||||| Sbjct 643662 GAATAGGGAATATTACAAATCTATGGGGATTTT 643694 Score = 98.7 bits (108), Expect = 1e-15 Identities = 106/141 (75%), Gaps = 6/141 (4%) Strand=Plus/Plus Query 47795 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA------GACATAACTCCCAT 47848 |||||| ||| |||| || | ||| |||| || |||| ||||| |||||||| Sbjct 641696 TTAAAAATCAGCATCCAATGTAAATTGATGATTACTTTGACCACCTGACATCACTCCCAT 641755 Query 47849 TTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 47908 | ||||||||||||| || | ||||| ||||| |||| ||| ||||| | ||||| Sbjct 641756 TCTTTGATATTCACCTACTCTCTTCTCAAAAAAGTTAGATTTCCCTTCAAGGGATATTAA 641815 Query 47909 TTCCATAAAATCAAATGGATT 47929 ||||||||||||||| || || Sbjct 641816 TTCCATAAAATCAAAAGGGTT 641836 Score = 93.3 bits (102), Expect = 6e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 48401 ATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGC 48460 |||||| | || ||||||||||| | || ||||| || ||| ||||| || || || Sbjct 643176 ATCTTTGATATAGGTATCTATTAATAAGCTGTACATCTCACTGTGGATATTCTCCATGGC 643235 Query 48461 CATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTC 48520 | ||||| || || |||||||| |||||||| ||||||||||| ||| |||||||| Sbjct 643236 AACTTGAAAACCATAGAAACATCTTGCTTCTGTTATCTGTACCTCTTTACTGAATCGTTC 643295 Query 48521 AGCC 48524 | || Sbjct 643296 AACC 643299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694629994064160