Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lottia_20gigantea_20[refseq_20GCF_5F000327385.1_202012-12-20] 4,469 sequences; 359,505,668 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2153 143 4e-29 seq2942 131 2e-25 >seq2153 Length=2898250 Score = 143 bits (158), Expect = 4e-29 Identities = 161/213 (76%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 47013 CAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAA 47072 |||||| |||||||| || |||||||| |||||||| || |||| |||||| ||| || Sbjct 643483 CAAATTTTCATTCACAATACCATCACTGGCAGCAAAGAAAGCCAGGACATGTGAAATGAA 643542 Query 47073 ATATTTTTCATC-GGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTT 47131 | || ||| || ||| | | | | ||| | | | | |||||| || | || |||| Sbjct 643543 GTGTTGTTCTTCAGGTTTTAAAGCT-TCCCAATGAATTAAATCTTTAGACAAGTCAACTT 643601 Query 47132 CTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATT 47191 ||||||| ||||| ||||| || || |||||||| ||||| | ||| |||||| ||||| Sbjct 643602 CTTCAGCAGTCCAAAATGATGCTTCAGCTTTTTTGTACATTTGCCAGATATCATCATATT 643661 Query 47192 GGATCGGAAAAATAACAAATCTATTTGGATTTT 47224 | || || || || |||||||||| ||||||| Sbjct 643662 GAATAGGGAATATTACAAATCTATGGGGATTTT 643694 Score = 125 bits (138), Expect = 1e-23 Identities = 160/218 (73%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 || |||| ||| || | ||| ||| || || | |||||||||| |||||||| || Sbjct 642612 TCGTCTCGACTGATCAGTTCATTACTGAAGGTTAAACCAGGCATTATACCACGCTTCTTC 642671 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 | ||||||||||| || || || ||||| ||||| || ||||| || || || || || Sbjct 642672 AACCAAAATATAGAGGCAAATGAACCAGAGAAGAAAATTCCTTCAACGGCAGCAAAAGCA 642731 Query 46774 ACAAGTCTCTCTCCGTA-ACTG--GCATCATTATGAATCCACCTTTGAGCCCAATCAGCC 46830 |||| ||| ||| || ||| | |||| | |||||| || ||||||| || ||| Sbjct 642732 ACAACTCTTTCTGAATAGTCTGCCTCTTCATCACCAATCCATTTTAGAGCCCAGTCTGCC 642791 Query 46831 TTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 46868 || || |||||||| || | |||||| |||||||| || Sbjct 642792 TTCTTTTTTACACAGGGTAATGTTTCAATAGCATTGAA 642829 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/141 (74%), Gaps = 6/141 (4%) Strand=Plus/Plus Query 46284 TTAAAAGTCGACATCTAAAGAAAAATGATTATCTTCTTG------TGACATAACTCCCAT 46337 |||||| || |||| || | ||| |||| || ||| |||||| |||||||| Sbjct 641696 TTAAAAATCAGCATCCAATGTAAATTGATGATTACTTTGACCACCTGACATCACTCCCAT 641755 Query 46338 TTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 46397 | |||| ||||||||||| | ||||| ||||| |||| ||| ||||| | ||||| Sbjct 641756 TCTTTGATATTCACCTACTCTCTTCTCAAAAAAGTTAGATTTCCCTTCAAGGGATATTAA 641815 Query 46398 TTCCATAAAATCAAACGGATT 46418 ||||||||||||||| || || Sbjct 641816 TTCCATAAAATCAAAAGGGTT 641836 Score = 93.3 bits (102), Expect = 6e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 |||||| | ||| ||||||||||| | || ||||| || || || || || || || Sbjct 643176 ATCTTTGATATAGGTATCTATTAATAAGCTGTACATCTCACTGTGGATATTCTCCATGGC 643235 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTC 47009 | ||||| || || |||||||||||||| || |||||||||||| ||| |||||||| Sbjct 643236 AACTTGAAAACCATAGAAACATCTTGCTTCTGTTATCTGTACCTCTTTACTGAATCGTTC 643295 Query 47010 A 47010 | Sbjct 643296 A 643296 >seq2942 Length=2007428 Score = 131 bits (144), Expect = 2e-25 Identities = 159/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 76519 TTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGA 76578 ||| ||||| || ||||| |||| || | || |||||||| ||||||||||| | Sbjct 1920160 TTCGAATTCTTCACCCCAGACATTTTCGAGGCCTGGACATTCCCCTGGACACATCAAGGT 1920101 Query 76579 CCACTCACCATCTTCCTTA-ACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAA 76637 ||| | |||| | | || |||||||||||||| | |||||| ||||| || ||| | Sbjct 1920100 CCAGTTTCCAT-TGCTTTCCACCCGTTTCATAAATAAATCAGGAATCCACAGGGCATAGA 1920042 Query 76638 ATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCA 76697 ||| ||||| || || ||||||| || || ||||||||||| | ||||| ||||| | Sbjct 1920041 ATAAATCTCTGGCTCGCTGTTCTTCTTTACCAGTATTCTTTTTTAAATCTAAAAACTCGA 1919982 Query 76698 TAATATCAGAATGCCATGGTTCTAGATATATCGC 76731 || ||| | ||||||||||| | ||| || || Sbjct 1919981 AAACATCTGCGTGCCATGGTTCAATATAGATAGC 1919948 Score = 114 bits (126), Expect = 2e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 ||||| | |||||||||||||| |||| ||| |||| | || || || |||||||||| Sbjct 1923530 TCCATGCATAGAAATGCATGCTGGTTAATTTACCATAATTAGGTTCCGCAATATGAATAT 1923471 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 ||| ||||||||| ||||| || ||||||||| ||| || ||||| || || | || | Sbjct 1923470 TCAACGACTGACTCTGATCAATATAAGCTCCTCGATCGGCGGCCATCTTGATCACAGTTT 1923411 Query 75564 TTTGAGGAATTTCCCAAATAGTTTTG 75589 |||| |||||||| | |||||| Sbjct 1923410 TTTGGCTGATTTCCCACGTTGTTTTG 1923385 Score = 113 bits (124), Expect = 6e-20 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 || ||||||||||||| ||||||| || || |||||||||||||| | ||| | || | Sbjct 1922577 TGGAATTCTCCAGACAGAACTCTTCTGGTATATATATTACTGGTATAGGCTTCTATAGCT 1922518 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| || || | || ||||| || || || || ||||| || |||| ||||||||| Sbjct 1922517 TCATTATTACCAAGTATCTGAGCTGTAGAGGCTGTTGGCATCGGCGCCATTAATAAACTA 1922458 Query 75842 TTTCTGAGACCATGT 75856 ||||| | ||||||| Sbjct 1922457 TTTCTTACACCATGT 1922443 Score = 96.9 bits (106), Expect = 5e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 ||||| | ||||| || || || |||| ||| || || || ||||||||||| || || Sbjct 1917103 CTAAAGACTTTTTGGGTCTCTTTATGTAAATTAGACACAGCAATTCTAGCAGCGAGTATA 1917044 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 || || || ||||||| || || ||| || ||| | || || |||| | | |||||| Sbjct 1917043 GCGTACTCGGGATGTTTGGTTGTCATGGTAGCAGCTGTCTCGGCAGCTAGATTGTCTAAT 1916984 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTT 77499 |||| |||||||| || | ||| || || | |||||||| Sbjct 1916983 TCTACTGTAGTAACACCCTGATAGAGACCATTGATAACTTT 1916943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712894573702080