Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= AC_000006.1 Length=35100 Score E Sequences producing significant alignments: (Bits) Value seq201746 199 9e-47 >seq201746 Length=230 Score = 199 bits (220), Expect = 9e-47 Identities = 178/212 (84%), Gaps = 11/212 (5%) Strand=Plus/Minus Query 5998 CATCCATCTGGTCAGAAAAGACTAtttttttATTGTCAAGCTTGG-TGGCAAAGGAGCCA 6056 |||||||||||||||||| ||| || |||| ||||| |||||| ||||||| || || Sbjct 212 CATCCATCTGGTCAGAAA-GACAATCTTTTG--TGTCA-GCTTGGGTGGCAAACGACCCG 157 Query 6057 TAGAGGGCGTTGGAGAGAAGCTTGGCGATGG-ATCTCATGG--TCTGATTTTTGTCACGG 6113 |||||||||||||| || | ||||||||||| | | || || | || |||||| | || Sbjct 156 TAGAGGGCGTTGGACAGCAACTTGGCGATGGGAGCGCAGGGGTTTTGGTTTTTG-CGCGA 98 Query 6114 TCGGCGCGCTCCTTGGCCGCGATGTTGAGCTGGACATATTCGCGCGCGACACACTTCCAT 6173 |||||||||||||||||||||||||| ||||| || ||||||||||| || ||| |||| Sbjct 97 TCGGCGCGCTCCTTGGCCGCGATGTTTAGCTGCACGTATTCGCGCGCAACGCACCGCCAT 38 Query 6174 TCGGGAAAGACGGTGGTGCGCTCGTCGGGCAC 6205 ||||||||| |||| ||||||||||||||||| Sbjct 37 TCGGGAAAG-CGGT-GTGCGCTCGTCGGGCAC 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 111768323477336