Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= AC_000007.1 Length=35937 Score E Sequences producing significant alignments: (Bits) Value seq201746 333 6e-87 >seq201746 Length=230 Score = 333 bits (368), Expect = 6e-87 Identities = 224/238 (94%), Gaps = 12/238 (5%) Strand=Plus/Minus Query 6175 ATGCCTTTGAGGGTGGCCGCGTCCATCTGGTCAGAAAAGACAATCTTTTTGTTGTCAAGC 6234 ||||||||||||||| |||| |||||||||||||||| ||||||||||| ||||| || Sbjct 230 ATGCCTTTGAGGGTG-CCGCATCCATCTGGTCAGAAA-GACAATCTTTTG--TGTCA-GC 176 Query 6235 TTGG-TGGCAAACGACCCGTAGAGGGCGTTGGACAGCAACTTGGCGATGG-AGCGCAGGG 6292 |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 175 TTGGGTGGCAAACGACCCGTAGAGGGCGTTGGACAGCAACTTGGCGATGGGAGCGCAGGG 116 Query 6293 --TTTGGTTTTTGTCGCGATCGGCGCGCTCCTTGGCCGCGATGTTTAGCTGCACGTATTC 6350 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 115 GTTTTGGTTTTTG-CGCGATCGGCGCGCTCCTTGGCCGCGATGTTTAGCTGCACGTATTC 57 Query 6351 GCGCGCAACGCACCGCCATTCGGGAAAGACGGTGGTGCGCTCGTCGGGCACCAGGTGC 6408 |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 56 GCGCGCAACGCACCGCCATTCGGGAAAG-CGGT-GTGCGCTCGTCGGGCACCAGGTGC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114436456691372