Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= AC_000010.1 Length=35524 Score E Sequences producing significant alignments: (Bits) Value seq201746 134 3e-27 >seq201746 Length=230 Score = 134 bits (148), Expect = 3e-27 Identities = 148/187 (79%), Gaps = 9/187 (5%) Strand=Plus/Minus Query 6084 TCCATTTGGTCAGAAAAGACAATTTTCTTGTTGTCAAGCTTGG-TGGCAAAGGATCCGTA 6142 ||||| |||||||||| |||||| || |||| |||| |||||| ||||||| || ||||| Sbjct 210 TCCATCTGGTCAGAAA-GACAATCTT-TTGT-GTCA-GCTTGGGTGGCAAACGACCCGTA 155 Query 6143 TAGGGCATTGGATAAAAGCTTGGCGATGG-AGCGCATGG--TTTGGTTCTTATCCTTGTC 6199 ||||| ||||| | | ||||||||||| |||||| || ||||||| || | || Sbjct 154 GAGGGCGTTGGACAGCAACTTGGCGATGGGAGCGCAGGGGTTTTGGTTTTTGCGCGA-TC 96 Query 6200 CGCACGCTCCTTGGCAGCAATGTTGAGTTGGACGTACTCGCGCGCCAGGCACTTCCATTC 6259 || ||||||||||| || ||||| || || ||||| |||||||| | |||| |||||| Sbjct 95 GGCGCGCTCCTTGGCCGCGATGTTTAGCTGCACGTATTCGCGCGCAACGCACCGCCATTC 36 Query 6260 AGGAAAG 6266 |||||| Sbjct 35 GGGAAAG 29 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113119922620408