Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= AC_000011.1 Length=36519 Score E Sequences producing significant alignments: (Bits) Value seq201746 194 4e-45 >seq201746 Length=230 Score = 194 bits (214), Expect = 4e-45 Identities = 188/230 (82%), Gaps = 10/230 (4%) Strand=Plus/Minus Query 6066 ATGCCTTTCAAGAGCCCCTCGTCCATCTGGTCAGAAAAGACGATCTTTTTGTTGTCGAGC 6125 |||||||| | | | || | |||||||||||||||| ||| ||||||| |||| ||| Sbjct 230 ATGCCTTTGAGG-GTGCCGCATCCATCTGGTCAGAAA-GACAATCTTTTG--TGTC-AGC 176 Query 6126 TTGG-TGGCGAAGGAGCCGTAGAGGGCGTTGGAGAGGAGCTTGGCGATGG-AGCGCATGG 6183 |||| |||| || || ||||||||||||||||| || | ||||||||||| |||||| || Sbjct 175 TTGGGTGGCAAACGACCCGTAGAGGGCGTTGGACAGCAACTTGGCGATGGGAGCGCAGGG 116 Query 6184 -TCTGGtttttttCCTTGTCGGCGCGCTCCTTGGCGGCGATGTTGAGCTGCACGTACTCG 6242 | | | ||||| | ||||||||||||||||| |||||||| ||||||||||| ||| Sbjct 115 GTTTTGGTTTTTGCGCGATCGGCGCGCTCCTTGGCCGCGATGTTTAGCTGCACGTATTCG 56 Query 6243 CGCGCCACGCACTTCCATTCGGGGAAGACGGTGGTCAGCTCGTCGGGCAC 6292 ||||| |||||| ||||||||| ||| |||| || ||||||||||||| Sbjct 55 CGCGCAACGCACCGCCATTCGGGAAAG-CGGT-GTGCGCTCGTCGGGCAC 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116291717779268