Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq295142 176 5e-39 seq129531 154 2e-32 seq256343 93.3 4e-14 >seq295142 Length=2525 Score = 176 bits (194), Expect = 5e-39 Identities = 401/599 (67%), Gaps = 6/599 (1%) Strand=Plus/Plus Query 16943 TTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATA 17002 || ||||| || |||||||||||||| || ||||| || | ||||||||||||||||| Sbjct 1776 TTGAGATGCTTGAACATCAGACATGCAAAGTCGCAGTGAAGACCCTCGTCTCTGCTGATG 1835 Query 17003 AGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCG 17062 ||||| || || || || | ||| |||||| ||||||||||| | ||| || || ||| Sbjct 1836 AGTTCATTTGAGAAGGTAAGCCCTGGCATCAGACCTCGTTTCTTGAGCCAGAAGATTGCG 1895 Query 17063 GCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCG 17122 || || || || || ||||| || ||||| || | ||| || || | | | || | Sbjct 1896 GCAAAGGAACCCGAGAAGAAGATGCCCTCTACTGCTGCGAAAGC-AACGACCCTTGTACC 1954 Query 17123 TACGTC-GCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCA 17181 | ||| ||| | | ||| ||||| | | || |||| | ||||| | | | || Sbjct 1955 AAAGTCTGCGCTGTCGCTACTGATCCAGTCCAGCGCCCATTGCGCTTTCTTGGTGACACA 2014 Query 17182 ATCCATCGTTTCTATGGCCTTAAATAATT--TCTCTTTTTCCTGTAGGTCGATTATATAC 17239 ||| || || | ||| || || | | ||||| | ||| | || | || || Sbjct 2015 CGGCATGGTCTCAACGGCATTGAAGAGGTAATCTCTCTGAGCTGAA--TCTTTGATGTAT 2072 Query 17240 GTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCG 17299 || |||||||||| |||||||| ||||| ||||| || || || ||||| || ||| Sbjct 2073 GTGTCGATGAGTAATGAATACATTTCTGAGTGGATGTTTTCAATTGCAATCTGGAACCCG 2132 Query 17300 TAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCG 17359 || || || | || || || || || ||||| | || | ||| | | || || Sbjct 2133 TAGAAACACCTCGCCTCTGCAATCTGCACTTCTTGGCTAAACCTTTCAACCAAGTTCTCA 2192 Query 17360 TTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCG 17419 || || || || ||||| || ||||| || || | | |||| ||||| | | || Sbjct 2193 TTGACAATACCATCGCTTGCAGCGAAGAAAGCAAGAACATGCGAGATGAAGTGCCTCTCA 2252 Query 17420 TCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTC 17479 | ||| || | ||| | | || |||||||| | ||| || || |||| ||| Sbjct 2253 TTGTCTGTGAGCTTGGCCCAATGGTCCAAGTCTTTGGAAAGATCGACCTCCTCGGCCGTC 2312 Query 17480 CAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 || || ||| | ||||| || || | | ||| || |||| ||||| |||||||| Sbjct 2313 CAGAAGGATGCCTCCGCCTTCTTGTAGAATTGCCAGATGTCATGATATTGGATGGGGAA 2371 >seq129531 Length=564 Score = 154 bits (170), Expect = 2e-32 Identities = 272/392 (69%), Gaps = 6/392 (2%) Strand=Plus/Minus Query 16943 TTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATA 17002 || |||||||| ||||||||||| || || ||||| || | ||||||||||||||||| Sbjct 389 TTGAGATGTTTGAACATCAGACAGGCAAAGTCGCAGTGAAGACCCTCGTCTCTGCTGATG 330 Query 17003 AGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCG 17062 ||||| || || || || | ||| |||||| ||||||||||| | ||| || ||||| Sbjct 329 AGTTCATTTGAGAAGGTAAGCCCTGGCATCAGACCTCGTTTCTTGAGCCAGAAGATCGCA 270 Query 17063 GCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCG 17122 || || || || || ||||| || ||||| || | ||| || || | | | || || Sbjct 269 GCAAAGGAACCCGAGAAGAAGATGCCCTCTACTGCTGCGAAAGC-AACGACCCTTGTGCC 211 Query 17123 TACGTC-GCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCA 17181 | ||| ||| | | ||| ||||| | | | |||| | ||||| | | | ||| Sbjct 210 AAAGTCTGCGCTGTCGCTACTGATCCAGTCCAACGCCCATTGTGCTTTCTTGGTGACGCA 151 Query 17182 ATCCATCGTTTCTATGGCCTTAAATAATT--TCTCTTTTTCCTGTAGGTCGATTATATAC 17239 ||| || || | ||| || || | | ||||| | ||| | || | || || Sbjct 150 TGGCATGGTCTCAACGGCATTGAAGAGGTAATCTCTCTGAGCTG--GATCTTTGATGTAT 93 Query 17240 GTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCG 17299 || |||||||||| |||||||| ||||| ||||| || || || ||||| || ||| Sbjct 92 GTGTCGATGAGTAATGAATACATTTCTGAGTGGATGTTTTCAATTGCAATCTGGAACCCG 33 Query 17300 TAAAAGCATCGGGCTTCCGCTATTTGAACTTC 17331 || || || | || || || || || ||||| Sbjct 32 TAGAAACACCTTGCCTCTGCAATCTGCACTTC 1 >seq256343 Length=109058 Score = 93.3 bits (102), Expect = 4e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||||||||||||||| ||||| || || || || | ||| |||||| |||||||||| Sbjct 31440 CCTCGTCTCTGCTGATGAGTTCATTTGAGAAGGTAAGCCCTGGCATCAGACCTCGTTTCT 31381 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| || ||||| || || || || || ||||| || ||||| || | ||| || | Sbjct 31380 TGAGCCAGAAGATCGCAGCAAAGGAACCCGAGAAGAAGATGCCCTCTACTGCTGCGAAAG 31321 Query 17106 C 17106 | Sbjct 31320 C 31320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515457342319920