Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq295142 223 4e-53 seq129531 163 3e-35 seq256343 111 2e-19 seq36655 105 7e-18 seq120787 100 3e-16 >seq295142 Length=2525 Score = 223 bits (246), Expect = 4e-53 Identities = 453/669 (68%), Gaps = 14/669 (2%) Strand=Plus/Plus Query 16121 TGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGG 16180 ||||| ||| ||||||||| | ||||| | | | | | ||| || || | | | Sbjct 1716 TGTTCGATCTTAACCGCTTCCCTGATGATCCCCTGGACATGAGCTTCCGATGGCTTGTTG 1775 Query 16181 TTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATA 16240 || || || || ||||| ||||| || |||||||| || || || |||||||||||||| Sbjct 1776 TTGAGATGCTTGAACATCAGACATGCAAAGTCGCAGTGAAGACCCTCGTCTCTGCTGATG 1835 Query 16241 AGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCA 16300 ||||| || || || || | ||||||||| ||||||||||| | |||||| || || Sbjct 1836 AGTTCATTTGAGAAGGTAAGCCCTGGCATCAGACCTCGTTTCTTGAGCCAGAAGATTGCG 1895 Query 16301 GCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCG 16360 ||||| || ||||| ||||| || ||||| || | ||| ||||| | || || | Sbjct 1896 GCAAAGGAACCCGAGAAGAAGATGCCCTCTACTGCTGCGAAAGC-----AACGACCCTTG 1950 Query 16361 TAC----GT-AGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTA 16415 ||| || || | ||| ||||| | | | |||||| ||||| | | | Sbjct 1951 TACCAAAGTCTGCGCTGTCGCTACTGATCCAGTCCAGCGCCCATTGCGCTTTCTTGGTGA 2010 Query 16416 TACAATCCATCGTTTCTATGGCCTTAAACAATT--TCTCTTTTTCCTGAATATCGATTAT 16473 ||| ||| || || | ||| || || | | ||||| | |||| ||| | || Sbjct 2011 CACACGGCATGGTCTCAACGGCATTGAAGAGGTAATCTCTCTGAGCTGA--ATCTTTGAT 2068 Query 16474 ATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAA 16533 || || || || ||||| |||||||||||||| ||||| || || || ||||| || Sbjct 2069 GTATGTGTCGATGAGTAATGAATACATTTCTGAGTGGATGTTTTCAATTGCAATCTGGAA 2128 Query 16534 TCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTT 16593 || ||||| || | ||||| || || || ||||| | ||| | ||| ||| ||| Sbjct 2129 CCCGTAGAAACACCTCGCCTCTGCAATCTGCACTTCTTGGCTAAACCTTTCAACCAAGTT 2188 Query 16594 CTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTT 16653 |||||| || ||||| || |||||||| || || || | | ||| ||||| | | Sbjct 2189 CTCATTGACAATACCATCGCTTGCAGCGAAGAAAGCAAGAACATGCGAGATGAAGTGCCT 2248 Query 16654 TTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGG 16713 || | ||| || | ||||| | || |||||||| | ||| || || || | Sbjct 2249 CTCATTGTCTGTGAGCTTGGCCCAATGGTCCAAGTCTTTGGAAAGATCGACCTCCTCGGC 2308 Query 16714 CGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGG 16773 |||||| ||| ||| | ||||| || || | || ||| || |||| ||||| ||||| Sbjct 2309 CGTCCAGAAGGATGCCTCCGCCTTCTTGTAGAATTGCCAGATGTCATGATATTGGATGGG 2368 Query 16774 AAATACGAC 16782 || | ||| Sbjct 2369 GAAGATGAC 2377 >seq129531 Length=564 Score = 163 bits (180), Expect = 3e-35 Identities = 310/452 (69%), Gaps = 6/452 (1%) Strand=Plus/Minus Query 16121 TGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGG 16180 ||||| ||| |||||||| | ||||| | | | | | ||| || || | | | Sbjct 449 TGTTCGATCTTGACCGCTTCCCTGATGATCCCCTGGACATGAGCTTCCGATGGCTTGTTG 390 Query 16181 TTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATA 16240 || || ||||| ||||| ||||| || |||||||| || || || |||||||||||||| Sbjct 389 TTGAGATGTTTGAACATCAGACAGGCAAAGTCGCAGTGAAGACCCTCGTCTCTGCTGATG 330 Query 16241 AGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCA 16300 ||||| || || || || | ||||||||| ||||||||||| | |||||| |||||| Sbjct 329 AGTTCATTTGAGAAGGTAAGCCCTGGCATCAGACCTCGTTTCTTGAGCCAGAAGATCGCA 270 Query 16301 GCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCG 16360 ||||| || ||||| ||||| || ||||| || | ||| ||||| | | | || || Sbjct 269 GCAAAGGAACCCGAGAAGAAGATGCCCTCTACTGCTGCGAAAGC-AACGACCCTTGTGCC 211 Query 16361 TACGT-AGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACA 16419 | || || | ||| ||||| | | |||||| ||||| | | | || Sbjct 210 AAAGTCTGCGCTGTCGCTACTGATCCAGTCCAACGCCCATTGTGCTTTCTTGGTGACGCA 151 Query 16420 ATCCATCGTTTCTATGGCCTTAAACAATT--TCTCTTTTTCCTGAATATCGATTATATAC 16477 ||| || || | ||| || || | | ||||| | ||| ||| | || || Sbjct 150 TGGCATGGTCTCAACGGCATTGAAGAGGTAATCTCTCTGAGCTG--GATCTTTGATGTAT 93 Query 16478 GTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCA 16537 || || || ||||| |||||||||||||| ||||| || || || ||||| || || Sbjct 92 GTGTCGATGAGTAATGAATACATTTCTGAGTGGATGTTTTCAATTGCAATCTGGAACCCG 33 Query 16538 TAGAAGCATCGAGCCTCCGCTATTTGTACTTC 16569 ||||| || | ||||| || || || ||||| Sbjct 32 TAGAAACACCTTGCCTCTGCAATCTGCACTTC 1 >seq256343 Length=109058 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 |||||||||||||| ||||| || || || || | ||||||||| ||||||||||| Sbjct 31438 TCGTCTCTGCTGATGAGTTCATTTGAGAAGGTAAGCCCTGGCATCAGACCTCGTTTCTTG 31379 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | |||||| ||||||||||| || ||||| ||||| || ||||| || | ||| ||||| Sbjct 31378 AGCCAGAAGATCGCAGCAAAGGAACCCGAGAAGAAGATGCCCTCTACTGCTGCGAAAGC 31320 >seq36655 Length=16638 Score = 105 bits (116), Expect = 7e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 16516 CTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTA 16575 ||| || |||||||| || ||||||||||| ||||| | ||| || ||||| Sbjct 6023 CTCCATTGCTATCTGGAAGCCATAGAAGCACTTGGCCTCTGGTATCTGAACTTCTTGACT 6082 Query 16576 AAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATAT 16635 || | |||| | |||||||||||||||||||| |||||||| ||||| |||||||| | Sbjct 6083 GAACCTTTCCACAAGGTTCTCATTCACGATACCATCACTTGCTGCAAAGAACGCCAACAC 6142 Query 16636 GTGCTTAATGAAATATTTTTCGT 16658 ||| ||| |||| ||| |||| Sbjct 6143 GTGGGTAACAAAATGTTTCTCGT 6165 >seq120787 Length=4847 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 16516 CTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTA 16575 ||| || || |||||||| ||||||||||| ||||| | ||| || ||||| Sbjct 880 CTCCATAGCAATCTGAAAGCCATAGAAGCACTTGGCCTCTGGTATCTGAACTTCTTGACT 939 Query 16576 AAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATAT 16635 || | |||| | |||||||||||||||||||| |||||||| ||||| |||||||| | Sbjct 940 GAACCTTTCCACAAGGTTCTCATTCACGATACCATCACTTGCTGCAAAGAACGCCAACAC 999 Query 16636 GTGCTTAATGAAATATTTTTCGT 16658 ||| ||| |||| || |||| Sbjct 1000 GTGGGTAACAAAATGTTACTCGT 1022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 509350881252080