Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_001454.1 Length=34214 Score E Sequences producing significant alignments: (Bits) Value seq201746 154 3e-33 >seq201746 Length=230 Score = 154 bits (170), Expect = 3e-33 Identities = 175/226 (77%), Gaps = 8/226 (4%) Strand=Plus/Minus Query 5735 ATGCTTTTGATGGTGGCTGAATCCATTTGGTCAGAAAATACAAtttttttGTTATCAAGT 5794 |||| ||||| |||| | | |||||| |||||||||| ||||| |||| | ||| | Sbjct 230 ATGCCTTTGAGGGTGCC-GCATCCATCTGGTCAGAAAG-ACAATCTTTTG--TGTCAGCT 175 Query 5795 TTGGTAGCAAAGGATCCATAGAGGGCGTTGGAGAGCAGTTTGGCAATGGAA-CGCAGTG- 5852 | ||| ||||| || || |||||||||||||| |||| ||||| |||| | ||||| | Sbjct 174 TGGGTGGCAAACGACCCGTAGAGGGCGTTGGACAGCAACTTGGCGATGGGAGCGCAGGGG 115 Query 5853 TTTGGtttttttCGCGGTCGGCACGCTCCTTGGCGGTGATATTAAGATGAACGTACTCTT 5912 ||| | ||||| |||| ||||| ||||||||||| | ||| || || || ||||| || Sbjct 114 TTTTGGTTTTTGCGCGATCGGCGCGCTCCTTGGCCGCGATGTTTAGCTGCACGTATTCGC 55 Query 5913 TTGCCACGCAGCGCCACTCGGGAAAGACAGTGGCGCGCTCGTCGGG 5958 || ||||| ||||| ||||||||| | || | |||||||||||| Sbjct 54 GCGCAACGCACCGCCATTCGGGAAAG-CGGT-GTGCGCTCGTCGGG 11 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 108943991305728