Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq295142 288 1e-72 seq305029 230 3e-55 seq129531 194 2e-44 seq289945 163 3e-35 seq289887 89.7 6e-13 seq256343 82.4 9e-11 >seq295142 Length=2525 Score = 288 bits (318), Expect = 1e-72 Identities = 602/893 (67%), Gaps = 13/893 (1%) Strand=Plus/Plus Query 23831 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 23890 |||||||||||| ||||||||||| || || || || || || || || ||||| Sbjct 1493 CATAACTCCCATCAGCTGGTATTCACCGACCTTCTTCTCAAAGAAGTTCGTCTTTCCTTC 1552 Query 23891 TAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCC 23950 | || || ||||||||||| ||| |||| || ||||| |||| ||||| | | Sbjct 1553 CAGCGAGATGTTTTCCATGAAGTCGAATGGGTTCTCGACATTCCAGATCTTTTTACAGTC 1612 Query 23951 CAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATT 24010 | ||| || ||| || || || |||||||| || || || ||||| | | ||| Sbjct 1613 AAGCTCAACAAGCAACCTGTCGGCTACAAACTCGATGTAGGTCTTCATGAGGCCGGCATT 1672 Query 24011 CATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGC 24070 ||| || || || || ||||| | || || || || ||||| || ||||| Sbjct 1673 CATACCGATGAGAGAGCAGGGTAGAGCGTCCGTCAGGAACTCCTGTTCGATCTTAACCGC 1732 Query 24071 GTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAAT---AAATGTTTAAA 24127 || | || || || |||| || ||| | | ||| || || Sbjct 1733 TTCCCTGATGATCCCCTGGACATGAGCTTC---CGATGGCTTGTTGTTGAGATGCTTGAA 1789 Query 24128 CATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAA 24187 ||||| |||||| || |||||||| |||||||||||||| || || | ||| || || || Sbjct 1790 CATCAGACATGCAAAGTCGCAGTGAAGACCCTCGTCTCTGCTGATGAGTTCATTTGAGAA 1849 Query 24188 CGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGA 24247 || || || ||||| || || || || || ||||| || || | ||||| || || || Sbjct 1850 GGTAAGCCCTGGCATCAGACCTCGTTTCTTGAGCCAGAAGATTGCGGCAAAGGAACCCGA 1909 Query 24248 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTC 24307 ||||| || || |||||||| || || |||| | ||| ||| | | |||||||| Sbjct 1910 GAAGAAGATGCCCTCTACTGCTGCGAAAGCAACGACCCTTGTACCAAAGTCTGCGCTGTC 1969 Query 24308 ---ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTAT 24364 | ||||| | | ||||| | || ||||| | ||||| ||||| ||||| | Sbjct 1970 GCTACTGATCCAGTCCAGCGCCCATTGCGCTTTCTTGGTGACACACGGCATGGTCTCAAC 2029 Query 24365 AGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA--AAAGA 24422 ||||| ||||| || | | | | | |||||| | ||||| || || | || || Sbjct 2030 GGCATTGAAGAGGTAATCTCTCTGAGCTGAATCTTTGATGTATGTGTCGATGAGTAATGA 2089 Query 24423 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 24482 ||||||||| || || ||||||||||| || || || || ||||||||||| || ||| Sbjct 2090 --ATACATTTCTGAGTGGATGTTTTCAATTGCAATCTGGAACCCGTAGAAACACCTCGCC 2147 Query 24483 TCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 24542 || | |||||| |||||| | ||| | ||| | || || ||||| || || || || Sbjct 2148 TCTGCAATCTGCACTTCTTGGCTAAACCTTTCAACCAAGTTCTCATTGACAATACCATCG 2207 Query 24543 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA 24602 || || || || || || | ||||| || || | | || | ||| || || Sbjct 2208 CTTGCAGCGAAGAAAGCAAGAACATGCGAGATGAAGTGCCTCTCATTGTCTGTGAGCTTG 2267 Query 24603 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 24662 ||||| | | ||||| || | ||| || || || | ||||| || |||||||| Sbjct 2268 GCCCAATGGTCCAAGTCTTTGGAAAGATCGACCTCCTCGGCCGTCCAGAAGGATGCCTCC 2327 Query 24663 GCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 ||||| || || | | |||||||||||||||||| || || || || ||||| Sbjct 2328 GCCTTCTTGTAGAATTGCCAGATGTCATGATATTGGATGGGGAAGATGACAAA 2380 >seq305029 Length=127772 Score = 230 bits (254), Expect = 3e-55 Identities = 380/538 (71%), Gaps = 14/538 (3%) Strand=Plus/Minus Query 53732 ACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTT 53791 ||||||| || | | ||| | || ||||| || || || ||||| || ||||||||| Sbjct 94094 ACCTCATCAGGACTTGAATACTCTACGATCTCTGTACACAGGTTACTGCATTTGATGGTT 94035 Query 53792 CCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTA 53851 || || |||||||| |||||||| ||||||| ||||| || || || |||| ||| Sbjct 94034 CCCAAGTTTTGTTGGTTACTCTTCCTGTTACAATGGTCCTTGTACAGCATATATGGGGTA 93975 Query 53852 CCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGAT 53911 ||||| || | || ||||| || || || | ||| | | | ||||| ||| | | Sbjct 93974 CCAGTCTCTGTTTGAGATTCAATGATGGCATACCACAGAGCCTGGGCCTTCATTGTC--T 93917 Query 53912 TTGTATCTCTTTTCT-CTTTCGTATAGT----GTATACAATCGTTCAAACTCGTCTCCCC 53966 | || | |||| || ||||| ||| | ||| | | |||||| || ||||||| Sbjct 93916 TCCTACC-CTTTCCTTCTTTCTCATACTTCTCGTAGAGCTT--TTCAAATTCATCTCCCC 93860 Query 53967 AAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCT 54026 |||| || || | ||||| ||||||| || ||||| | | ||| || || ||| | | Sbjct 93859 AAACGTTTTCTAGGCCAGGGCATTCATGAGGGCACATGAGGGTCCAGTCACCATCAGCTT 93800 Query 54027 TCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTA 54085 || | ||||||||||||||||| ||||| || || ||| || ||||||| || ||| Sbjct 93799 CAACCCTCTTCATAAAGAGATCAGGGATCCAGAGGGC-ATAGAACAGATCTCGGGCTCTC 93741 Query 54086 TGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCAC 54145 |||||||| || || ||||| ||| || | ||| | ||||||| |||||| Sbjct 93740 TGTTCCTCCTTGCCGTGGTTCTTCTTACAGTCTAAGAAATCATGGATATCAGCATGCCAT 93681 Query 54146 GGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTA 54205 || || | ||| |||| | | ||||| || || || ||||||||||||| |||||| Sbjct 93680 GGCTCTAGGTAGATGGCAAAGGCACCAGGACGCTTATTGCCTCCCTGATCTACATATCTA 93621 Query 54206 GCGGTGTTATTATAAACTCTCAACATTGG-AATAATACCATTGGATGCACCATTGGTC 54262 || || || || || || | | |||||| ||||| ||||||||| ||||| ||| Sbjct 93620 GCTGTATTGTTGTACACACGAAGCATTGGTAATAA-ACCATTGGAGTTGCCATTTGTC 93564 Score = 95.1 bits (104), Expect = 1e-14 Identities = 113/151 (75%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 53950 TTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 54009 |||||| || ||||||||||| || || | ||||| ||||||| || ||||| | | Sbjct 92218 TTCAAATTCATCTCCCCAAACGTTTTCTAGGCCAGGGCATTCATGAGGGCACATGAGTGT 92159 Query 54010 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 54068 ||| || || || | | || | ||||| ||||||||||| ||||| || || ||| | Sbjct 92158 CCAGTCACCATCGGCTTCAACCCTCTTCATGAAGAGATCAGGGATCCAGAGGGC-ATAGA 92100 Query 54069 ATAGATCTCTGGTTCTATGTTCCTCGTTTCC 54099 |||| ||||| | ||| |||||||| || || Sbjct 92099 ATAGGTCTCTAGCTCTCTGTTCCTCCTTGCC 92069 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 53732 ACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTT 53791 ||||||| || | | ||| | || ||||| || || || ||||| || ||||||||| Sbjct 95789 ACCTCATCAGGACTTGAATACTCTACGATCTCTGTACACAGGTTACTGCATTTGATGGTT 95730 Query 53792 CCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTA 53851 || || |||||||| |||||||| ||||||| ||||| || || || |||| ||| Sbjct 95729 CCCAAGTTTTGTTGGTTACTCTTCCTGTTACAATGGTCCTTGTAGAGCATATATGGGGTA 95670 Query 53852 CCAGTTTCAATCTGGGATTCTATAATCGCTTTCCA 53886 ||||| || | || ||||| || || || | ||| Sbjct 95669 CCAGTCTCTGTTTGAGATTCAATGATGGCATACCA 95635 >seq129531 Length=564 Score = 194 bits (214), Expect = 2e-44 Identities = 276/386 (72%), Gaps = 7/386 (2%) Strand=Plus/Minus Query 24119 ATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTC 24178 |||||| ||||||| ||| || || |||||||| |||||||||||||| || || | ||| Sbjct 384 ATGTTTGAACATCAGACAGGCAAAGTCGCAGTGAAGACCCTCGTCTCTGCTGATGAGTTC 325 Query 24179 GTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAA 24238 || || || || || || ||||| || || || || || ||||| || || | ||||| Sbjct 324 ATTTGAGAAGGTAAGCCCTGGCATCAGACCTCGTTTCTTGAGCCAGAAGATCGCAGCAAA 265 Query 24239 TGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACC 24298 || || || ||||| || || |||||||| || || |||| | ||| ||| | | Sbjct 264 GGAACCCGAGAAGAAGATGCCCTCTACTGCTGCGAAAGCAACGACCCTTGTGCCAAAGTC 205 Query 24299 GGCGCTGTC---ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 24355 |||||||| | ||||| | ||||| | || ||||| | || || ||||| Sbjct 204 TGCGCTGTCGCTACTGATCCAGTCCAACGCCCATTGTGCTTTCTTGGTGACGCATGGCAT 145 Query 24356 TGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAAT 24415 ||||| | ||||| ||||| || | | | | | |||||| | ||||| || || Sbjct 144 GGTCTCAACGGCATTGAAGAGGTAATCTCTCTGAGCTGGATCTTTGATGTATGTGTCGAT 85 Query 24416 CA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAA 24473 | || || ||||||||| || || ||||||||||| || || || || ||||||||| Sbjct 84 GAGTAATGA--ATACATTTCTGAGTGGATGTTTTCAATTGCAATCTGGAACCCGTAGAAA 27 Query 24474 CATCTAGCCTCGGTAATCTGTACTTC 24499 || || ||||| | |||||| ||||| Sbjct 26 CACCTTGCCTCTGCAATCTGCACTTC 1 >seq289945 Length=532 Score = 163 bits (180), Expect = 3e-35 Identities = 259/371 (70%), Gaps = 3/371 (1%) Strand=Plus/Minus Query 52838 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTT 52897 || || || || ||||| ||||| || ||||| |||||| | | || |||||||| Sbjct 381 GTGCGAAGGTAATACATACCCGTCTTCAGACCCGATCTCCATGCAAAGAAGTGCATACTG 322 Query 52898 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 52957 ||||| ||| ||| | || || || || || ||||| | |||||||| ||||| ||| Sbjct 321 GTTAGCTTGCCATAGTTTGGTTCAGCAATGTGAATATTAAGTGATTGACTCTGATCAATG 262 Query 52958 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 53017 | || || | ||| ||||||| | || | ||||| |||| || ||||||| ||| Sbjct 261 TATGCACCGCGGTCAACAGCCATCTGAATAACAGTCTTCTGTGAGATCTCCCAAACAGTC 202 Query 53018 TTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTA---TTCTGAATAGATCCACCATCT 53074 ||||| | | ||| || || ||||| | || | ||||||||||||||| | Sbjct 201 TTATACAATGCCTTGATGTCATCTGGGATTGATGGAATGTTCTGAATAGATCCAGAGTGA 142 Query 53075 ACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGG 53134 | || | | ||||||| ||||||||| ||| | | ||||| | | ||||| Sbjct 141 GCAATGAGCATATTCTTCATCTCATCAGACCACAGACCCATGTCGGTAAGGTCCCTAAGA 82 Query 53135 AGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTG 53194 ||||| |||| || || ||||| ||||| || | || | || ||||| ||||||||| Sbjct 81 AGATGATGATTGACGACCTGAAACTCTCCTGAAAGCACACGACGCGTGTAGATATTACTG 22 Query 53195 GTATACGGTTC 53205 || ||||| || Sbjct 21 GTGTACGGCTC 11 >seq289887 Length=335 Score = 89.7 bits (98), Expect = 6e-13 Identities = 112/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 53950 TTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 54009 |||||| || ||||||||||| || || | ||||| ||||||| || ||||| | | Sbjct 185 TTCAAATTCATCTCCCCAAACGTTTTCTAGGCCAGGGCATTCATGAGGGCACATGAGTGT 244 Query 54010 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 54068 ||| || || || | | || | ||||| ||||||||||| ||||| || || ||| | Sbjct 245 CCAGTCACCATCGGCTTCAACCCTCTTCATGAAGAGATCAGGGATCCAGAGGGC-ATAGA 303 Query 54069 ATAGATCTCTGGTTCTATGTTCCTCGTTTCC 54099 | ||||||| | ||| |||||||| || || Sbjct 304 ACAGATCTCGAGCTCTCTGTTCCTCCTTGCC 334 >seq256343 Length=109058 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/108 (78%), Gaps = 4/108 (4%) Strand=Plus/Minus Query 24395 ATCTTTAACATATGTATCAATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATG 24452 |||||| | ||||| || || | || || ||||||||| || || ||||||||||| Sbjct 30504 ATCTTTGATGTATGTGTCGATGAGTAATGA--ATACATTTCTGAGTGGATGTTTTCAATT 30447 Query 24453 GCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500 || || || || ||||||||||| || ||||| | |||||| |||||| Sbjct 30446 GCAATCTGGAACCCGTAGAAACACCTTGCCTCTGCAATCTGCACTTCT 30399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591325977873120