Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq305346 113 4e-20 seq233793 107 2e-18 seq177272 100 2e-16 seq172955 98.7 8e-16 seq124407 96.9 3e-15 seq15040 95.1 1e-14 seq33451 89.7 4e-13 seq283656 86.0 5e-12 >seq305346 Length=360 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||||||||| || | ||| | ||| ||||||||||| ||||| ||||| | Sbjct 92 CCTCCACGCAGCCTGAGAACAAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCTGAT 151 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || |||| || || || ||||| ||| | || || | |||||| || ||| Sbjct 152 AGAGTGCGGCCGTCTTCGAGTTGCTTGCCAGCAAAGATGAGACGCTGCTGATCAGGGGGG 211 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| || || | ||| || |||| ||||| Sbjct 212 ATGCCTTCCTTGTCCTGAATCTTTGCCTTTACATTCTCGATGGTGTCACTTGGCTCAACC 271 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || ||||||||||| || | || ||||| || || ||||| Sbjct 272 TCAAGAGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATCTGCAT 318 >seq233793 Length=42987 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || |||||||| || | ||| | ||| ||||||||||| ||||| ||||| | Sbjct 12791 CCTCCACGGAGCCTGAGAACGAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCTGAT 12850 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || ||||||| || || ||||| || | || || | |||||| || ||| Sbjct 12851 AGAGTGCGGCCGTCCTCGAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGGGGA 12910 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| || || | ||| || |||| ||||| Sbjct 12911 ATGCCTTCCTTGTCCTGAATCTTTGCCTTTACATTCTCGATGGTGTCACTTGGCTCAACC 12970 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || ||||||||||| || | || ||||| || || ||||| Sbjct 12971 TCAAGAGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATCTGCAT 13017 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || |||||||| || | ||| | ||| |||||||| || ||||| ||||| | Sbjct 11534 CCACCACGAAGCCTGAGAACAAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAT 11593 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || ||||||| || || ||||| || | || || | |||||| || ||| Sbjct 11594 AGAGTGCGGCCGTCCTCGAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGG 11653 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| || || | ||| || |||| ||||| Sbjct 11654 ATGCCTTCCTTGTCCTGAATCTTTGCCTTTACGTTCTCGATGGTGTCACTTGGCTCAACC 11713 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || ||||||||||| || | || ||||| || || ||||| Sbjct 11714 TCAAGAGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATCTGCAT 11760 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || |||||||| || | ||| | ||| |||||||| || ||||| ||||| | Sbjct 13474 CCTCCACGGAGCCTGAGAACAAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGAT 13533 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || |||||||||| || ||||| || | || || | |||||| || ||| Sbjct 13534 AGAGTGCGGCCGTCCTCCAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGG 13593 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| || || | ||| || |||| ||||| Sbjct 13594 ATGCCTTCCTTGTCCTGAATCTTTGCCTTTACGTTCTCGATGGTGTCACTTGGCTCAACC 13653 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || ||||||||||| || | || || || || || ||||| Sbjct 13654 TCAAGAGTTATGGTCTTGCCTGTGAGGGTCTTCACGAAGATCTGCAT 13700 Score = 100 bits (110), Expect = 2e-16 Identities = 159/227 (70%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || |||||||| || | ||| | ||| |||||||| || ||||| ||||| | | Sbjct 13019 CCTCCACGGAGCCTGAGAACAAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGAC 13078 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | || ||||| || ||||| || | || || | |||||| || ||| Sbjct 13079 AGAGTGCGGCCATCTTCCAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGA 13138 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| ||| |||| | || | ||| || |||| ||||| Sbjct 13139 ATGCCTTCCTTGTCTTGAATC-TTTGCCTTACATTCTCGATGGTGTCACTTGGCTCAACC 13197 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || ||||||||||| || | || ||||| || || ||||| Sbjct 13198 TCAAGAGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATCTGCAT 13244 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || |||||||| || | ||| | ||| |||||||| || ||||| ||||| | Sbjct 13246 CCTCCACGAAGCCTGAGAACGAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGAT 13305 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || ||||||| || || ||||| || | || || | |||||| || ||| Sbjct 13306 AGAGTGCGGCCGTCCTCGAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGGGGA 13365 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| ||||| || || | | | || |||| ||||| Sbjct 13366 ATGCCTTCCTTGTCCTGAATCTTAGCCTTTACGTTCTCAATGGTGTCACTTGGCTCAACC 13425 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || ||||||||||| || | || ||||| || || ||||| Sbjct 13426 TCAAGAGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATCTGCAT 13472 >seq177272 Length=310 Score = 100 bits (110), Expect = 2e-16 Identities = 159/227 (70%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || |||||||| || | ||| | ||| |||||||| || ||||| ||||| | Sbjct 13 CCTCCACGGAGCCTGAG-ACAAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGAT 71 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || |||| ||||| || ||||| || | || || | |||||| || ||| Sbjct 72 AGAGTGCGGCCGTCTTCCAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGA 131 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| || || | ||| || |||| ||||| Sbjct 132 ATGCCTTCCTTGTCTTGAATCTTTGCCTTTACATTCTCGATGGTGTCACTTGGCTCAACC 191 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || ||||||||||| || | || ||||| || || ||||| Sbjct 192 TCGAGAGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 238 >seq172955 Length=397 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || |||||||| || | ||| | ||| ||||||||||| ||||| ||||| | Sbjct 321 CCTCCACGGAGCCTGAGAACAAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCTGAT 262 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | ||||| || || ||||| || | || || | |||||| || ||| Sbjct 261 AGAGTGCGGCCATCCTCGAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGGGGA 202 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| || || | ||| || || | ||||| Sbjct 201 ATGCCTTCCTTGTCCTGAATCTTTGCCTTTACATTCTCGATGGTGTCGCTTGGCTCAACC 142 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || ||||||||||| || | || ||||| || || ||||| Sbjct 141 TCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 95 >seq124407 Length=407 Score = 96.9 bits (106), Expect = 3e-15 Identities = 144/203 (71%), Gaps = 1/203 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || |||||||| || | ||| | ||| ||||||||||| ||||| ||||| | Sbjct 204 CCTCCACGGAGCCTGAGAACGAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCTGAT 145 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || ||||||| || || ||||| || | || || | |||||| | | ||| Sbjct 144 AGAGTGCGGCCGTCCTCGAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGAT-CGGGGGA 86 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| || || | ||| || |||| ||||| Sbjct 85 ATGCCTTCCTTGTCCTGAATCTTTGCCTTTACATTCTCGATGGTGTCACTTGGCTCAACC 26 Query 21129 TCCACGGTAATGGTCTTGCCGGT 21151 || | |||||||||||||| || Sbjct 25 TCAAGAGTAATGGTCTTGCCAGT 3 >seq15040 Length=705 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || |||||||| || | ||| | ||| || ||||| || ||||| ||||| | Sbjct 548 CCTCCACGGAGCCTGAGAACGAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCTGAT 489 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || ||||||| || || || || || | || || | |||||| || ||| Sbjct 488 AGAGTGCGGCCGTCCTCGAGTTGCTTTCCAGCGAAGATTAGACGCTGCTGATCGGGGGGA 429 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| || || | ||| || |||| ||||| Sbjct 428 ATGCCTTCCTTGTCCTGAATCTTTGCCTTTACATTCTCGATGGTGTCACTTGGCTCAACC 369 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || ||||||||||| || | || ||||| || || ||||| Sbjct 368 TCGAGAGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATCTGCAT 322 >seq33451 Length=524 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || |||||||| || | ||| | ||| |||||||| || ||||| ||||| | Sbjct 366 CCTCCACGGAGCCTGAGAACGAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGAT 307 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | ||||||| || || ||||| || | || || | |||||| || ||| Sbjct 306 AGAGTGCGACCGTCCTCGAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGGGGA 247 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGT-TTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | |||||||||||| || | |||| | || | ||| || |||| ||||| Sbjct 246 ATGCCTTCCTTGTC-CTGAATTCTTGTCCTTACATTCTCGATGGTGTCACTTGGCTCAAC 188 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || ||||||||||| || | || ||||| || || ||||| Sbjct 187 CTCAAGAGTGATGGTCTTGCCAGTAAGGGTCTTGACGAAGATCTGCAT 140 >seq283656 Length=776 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || ||||| ||||||| || | ||||||||||| || || || ||||| | | Sbjct 561 CCACCACGGAGCCTAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCAGAC 620 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | || |||||||| ||||| || | || || | |||||| || || Sbjct 621 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCGGGAGGG 680 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| || || || || | | | |||||||| ||| ||| Sbjct 681 ATACCTTCCTTGTCTTGAATTTTGGCCTTTACATTTTCAATAGTATCACTGGGTTCCACC 740 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGAC 21163 || | ||| ||||| || || || || ||||| || Sbjct 741 TCGAGGGTGATGGTTTTCCCCGTCAATGTTTTCAC 775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420598010402504