Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq15040 113 3e-20 seq233793 109 4e-19 seq177272 109 4e-19 seq172955 107 1e-18 seq305346 104 2e-17 seq301046 91.5 9e-14 seq283656 91.5 9e-14 seq33451 89.7 3e-13 >seq15040 Length=705 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||| || || || || | |||| ||| ||||| ||||||||||| || Sbjct 548 CCTCCACGGAGCCTGAGAACGAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCTGAT 489 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | ||||| || ||||| || || |||||||| ||| ||| Sbjct 488 AGAGTGCGGCCGTCCTCGAGTTGCTTTCCAGCGAAGATTAGACGCTGCTGATCGGGGGGA 429 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| |||||| ||||| || | || | || | | || || Sbjct 428 ATGCCTTCCTTGTCCTGAATCTTTGCCTTTACATTCTCGATGGTGTCACTTGGCTCAACC 369 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||| ||||| || || || ||||||||||| Sbjct 368 TCGAGAGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATCTGCAT 322 Score = 82.4 bits (90), Expect = 5e-11 Identities = 160/230 (70%), Gaps = 5/230 (2%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTT-GTAGTCGGA 34221 || || || ||||| || || || || | ||| || ||||| ||||| |||||| || Sbjct 320 CCTCCACGGAGCCTGAGAACAAGATGGAGAGTCGACTCCTTCTGGATGTTCGTAGTCTGA 261 Query 34222 C-AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGG 34280 || ||| |||| || | |||||||| ||||| ||||| |||||||| |||| || Sbjct 260 TTAGAGTGCGGCCGTCCTCGAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGAGGG 201 Query 34281 GC-ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCG 34339 | | || |||||||| |||||| ||| | || | || | || | | || Sbjct 200 GGGATGCCTTCCTTGTCCTGAATCTTTGCCTTACGTTCT-CGATGGTGTCACTTGGCTCA 142 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || | |||||| | ||||| ||||| || || || ||||||||||| Sbjct 141 ACCTCAAGAGTGATG-TCTTGCCTGTGAGGGTCTTGACGAAGATCTGCAT 93 >seq233793 Length=42987 Score = 109 bits (120), Expect = 4e-19 Identities = 161/227 (71%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||| || || || || | ||| || ||||| ||||||||||| ||| Sbjct 13019 CCTCCACGGAGCCTGAGAACAAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGAC 13078 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| |||||||| ||||| ||||| |||||||| || ||| Sbjct 13079 AGAGTGCGGCCATCTTCCAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGA 13138 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||| ||||| ||| || | || | || | | || || Sbjct 13139 ATGCCTTCCTTGTCTTGAATC-TTTGCCTTACATTCTCGATGGTGTCACTTGGCTCAACC 13197 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||| ||||| || || || ||||||||||| Sbjct 13198 TCAAGAGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATCTGCAT 13244 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||| || || || || | |||| || ||||| ||||||||||| || Sbjct 11534 CCACCACGAAGCCTGAGAACAAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAT 11593 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | |||||||| ||||| ||||| |||||||| || ||| Sbjct 11594 AGAGTGCGGCCGTCCTCGAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGG 11653 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| |||||| ||||| | | || | || | | || || Sbjct 11654 ATGCCTTCCTTGTCCTGAATCTTTGCCTTTACGTTCTCGATGGTGTCACTTGGCTCAACC 11713 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||| ||||| || || || ||||||||||| Sbjct 11714 TCAAGAGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATCTGCAT 11760 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||| || || || || | ||| || || || ||||||||||| || Sbjct 12791 CCTCCACGGAGCCTGAGAACGAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCTGAT 12850 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | |||||||| ||||| ||||| |||||||| ||| ||| Sbjct 12851 AGAGTGCGGCCGTCCTCGAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGGGGA 12910 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| |||||| ||||| || | || | || | | || || Sbjct 12911 ATGCCTTCCTTGTCCTGAATCTTTGCCTTTACATTCTCGATGGTGTCACTTGGCTCAACC 12970 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||| ||||| || || || ||||||||||| Sbjct 12971 TCAAGAGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATCTGCAT 13017 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||| || || || || | ||| || ||||| ||||||||||| || Sbjct 13474 CCTCCACGGAGCCTGAGAACAAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGAT 13533 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| |||| |||||||| ||||| ||||| |||||||| || ||| Sbjct 13534 AGAGTGCGGCCGTCCTCCAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGG 13593 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| |||||| ||||| | | || | || | | || || Sbjct 13594 ATGCCTTCCTTGTCCTGAATCTTTGCCTTTACGTTCTCGATGGTGTCACTTGGCTCAACC 13653 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || ||||| ||||| ||||| || ||||| ||||||||||| Sbjct 13654 TCAAGAGTTATGGTCTTGCCTGTGAGGGTCTTCACGAAGATCTGCAT 13700 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||| || || || || | ||| || ||||| ||||||||||| || Sbjct 13246 CCTCCACGAAGCCTGAGAACGAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGAT 13305 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | |||||||| ||||| ||||| |||||||| ||| ||| Sbjct 13306 AGAGTGCGGCCGTCCTCGAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGGGGA 13365 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||| ||||| | | || | || | | || || Sbjct 13366 ATGCCTTCCTTGTCCTGAATCTTAGCCTTTACGTTCTCAATGGTGTCACTTGGCTCAACC 13425 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||| ||||| || || || ||||||||||| Sbjct 13426 TCAAGAGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATCTGCAT 13472 >seq177272 Length=310 Score = 109 bits (120), Expect = 4e-19 Identities = 161/227 (71%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||| || || || || | ||| || ||||| ||||||||||| || Sbjct 13 CCTCCACGGAGCCTGAG-ACAAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGAT 71 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| |||| |||||||| ||||| ||||| |||||||| || ||| Sbjct 72 AGAGTGCGGCCGTCTTCCAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGA 131 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| |||||| ||||| || | || | || | | || || Sbjct 132 ATGCCTTCCTTGTCTTGAATCTTTGCCTTTACATTCTCGATGGTGTCACTTGGCTCAACC 191 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||| ||||| || || || ||||||||||| Sbjct 192 TCGAGAGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 238 >seq172955 Length=397 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||| || || || || | ||| || || || ||||||||||| || Sbjct 321 CCTCCACGGAGCCTGAGAACAAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCTGAT 262 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | |||||||| ||||| ||||| |||||||| ||| ||| Sbjct 261 AGAGTGCGGCCATCCTCGAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGGGGA 202 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| |||||| ||||| || | || | ||| | | || || Sbjct 201 ATGCCTTCCTTGTCCTGAATCTTTGCCTTTACATTCTCGATGGTGTCGCTTGGCTCAACC 142 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||| ||||| || || || ||||||||||| Sbjct 141 TCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 95 >seq305346 Length=360 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || |||||||| || || || || | ||| || || || ||||||||||| || Sbjct 92 CCTCCACGCAGCCTGAGAACAAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCTGAT 151 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | |||||||| || || ||||| |||||||| || ||| Sbjct 152 AGAGTGCGGCCGTCTTCGAGTTGCTTGCCAGCAAAGATGAGACGCTGCTGATCAGGGGGG 211 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| |||||| ||||| || | || | || | | || || Sbjct 212 ATGCCTTCCTTGTCCTGAATCTTTGCCTTTACATTCTCGATGGTGTCACTTGGCTCAACC 271 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||| ||||| || || || ||||||||||| Sbjct 272 TCAAGAGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATCTGCAT 318 >seq301046 Length=281 Score = 91.5 bits (100), Expect = 9e-14 Identities = 155/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 34173 GCCTCAGCACC--AGG-TGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGAC 34229 |||| || ||| ||| || | |||| ||| ||||| ||||||||||| || || | Sbjct 246 GCCTGAGAACCGTAGGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCTGATAGAGTGC 187 Query 34230 GGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCA-CGCTC 34288 || |||| || | |||||||| ||||| ||||| |||||||| ||| ||| | || Sbjct 186 GGCCGTCCTCGAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGGGGAAGTGCCT 127 Query 34289 TCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACC 34348 |||||||| ||||| ||||| | | || | || | | || || || | Sbjct 126 TCCTTGTCCTGAATCTTAGCCTTTACGTTCTCAATGGTGTCACTTGGCTCAACCTCAAGA 67 Query 34349 GTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| ||||| || || || || || ||||||||||| Sbjct 66 GTGATGGTCTTGCCAGTAAGGGTCTTGACGAAGATCTGCAT 26 >seq283656 Length=776 Score = 91.5 bits (100), Expect = 9e-14 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||| ||||||| ||| | || || ||||| || |||||||| ||| Sbjct 561 CCACCACGGAGCCTAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCAGAC 620 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| ||||||||| ||||| || || |||||||| ||| || Sbjct 621 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCGGGAGGG 680 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| || || ||||| || | || | ||| | | ||| || Sbjct 681 ATACCTTCCTTGTCTTGAATTTTGGCCTTTACATTTTCAATAGTATCACTGGGTTCCACC 740 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 || | ||||||||||| || || | |||||||| Sbjct 741 TCGAGGGTGATGGTTTTCCCCGTCAATGTTTTCAC 775 >seq33451 Length=524 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||| || || || || | ||| || ||||| ||||||||||| || Sbjct 366 CCTCCACGGAGCCTGAGAACGAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGAT 307 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || |||| || | |||||||| ||||| ||||| |||||||| ||| ||| Sbjct 306 AGAGTGCGACCGTCCTCGAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGGGGA 247 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| || || | ||| || | || | || | | || || Sbjct 246 ATGCCTTCCTTGTCCTGAATTCTTGTCCTTACATTCTCGATGGTGTCACTTGGCTCAACC 187 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||| || || || || || ||||||||||| Sbjct 186 TCAAGAGTGATGGTCTTGCCAGTAAGGGTCTTGACGAAGATCTGCAT 140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 321801017992640