Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq295142 176 4e-39 seq140081 95.1 1e-14 seq36655 87.8 2e-12 >seq295142 Length=2525 Score = 176 bits (194), Expect = 4e-39 Identities = 387/577 (67%), Gaps = 10/577 (2%) Strand=Plus/Plus Query 16220 TGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCG 16279 || || ||||| | ||| ||||| || || || | || ||||| || || || | || Sbjct 1782 TGCTTGAACATCAGACATGCAAAGTCGCAGTGAAGACCCTCGTCTCTGCTGATGAGTTCA 1841 Query 16280 TTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAAT 16339 ||||| || ||||| |||||||| || |||||||| || | ||| || || |||||||| Sbjct 1842 TTTGAGAAGGTAAGCCCTGGCATCAGACCTCGTTTCTTGAGCCAGAAGATTGCGGCAAAG 1901 Query 16340 GAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACC---GTAC 16396 ||||| || ||||| || || || ||||| || || ||||| | | ||| || Sbjct 1902 GAACCCGAGAAGAAGATGCCCTCTACTGCTGCGAAAGCAACGACCCTTGTACCAAAGTCT 1961 Query 16397 GTTCTAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTC 16456 | || | |||| ||||| | ||||| | ||||| | | ||||| | Sbjct 1962 GCGCTGTCGCTACTG---ATCCAGTCCAGCGCCCATTGCGCTTTCTTGGTGACACACGGC 2018 Query 16457 ATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCT--ATCTAAAATATAAGTAT 16514 ||| |||| | ||||| || | |||| | | || ||| |||| || || || | Sbjct 2019 ATGGTCTCAACGGCATTGAAGAGGTAATCTCT--CTGAGCTGAATCTTTGATGTATGTGT 2076 Query 16515 CTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAA 16574 | || ||||| |||||||||||| || || || || ||||| ||||| || || || | Sbjct 2077 CGATGAGTAATGAATACATTTCTGAGTGGATGTTTTCAATTGCAATCTGGAACCCGTAGA 2136 Query 16575 AGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAA 16634 | || || || || | || || ||||| | ||||||||| | ||||| || || | Sbjct 2137 AACACCTCGCCTCTGCAATCTGCACTTCTTGGCTAAACCTTTCAACCAAGTTCTCATTGA 2196 Query 16635 CTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTAT 16694 | || |||||||| || || || || ||||| | || || || | | || || | Sbjct 2197 CAATACCATCGCTTGCAGCGAAGAAAGCAAGAACATGCGAGATGAAGTGCCTCTCATTGT 2256 Query 16695 CTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAA 16754 ||| || || ||| | || ||||| || | ||||||||| || | ||||| | Sbjct 2257 CTGTGAGCTTGGCCCAATGGTCCAAGTCTTTGGAAAGATCGACCTCCTCGGCCGTCCAGA 2316 Query 16755 AAGAAGCAACAGCCTTTTTATACATTTTCCATATGTC 16791 | || || | ||||| || || | || ||| ||||| Sbjct 2317 AGGATGCCTCCGCCTTCTTGTAGAATTGCCAGATGTC 2353 >seq140081 Length=702 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/203 (71%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 58103 TGATGTAATAGGAATAGACGAAGGACAATTTTTTCCAGATATTGTAGAATTTTGCGAACG 58162 ||| || |||||||| || ||||| ||||||||||| ||| ||| | ||||| ||| Sbjct 208 TGAGGTCATAGGAATCGATGAAGGCCAATTTTTTCCTGATTGTGTGAAGTTTTGTGAAGA 267 Query 58163 TATGGCAAACGATGGAAAAATTGTAATAGTTGCTGCTTTAGACGGTACATTTTTAAGAGA 58222 ||||| ||| || ||||| | || || ||||| |||||||| ||||| || | Sbjct 268 AATGGCCAACCTAGGCAAAATCATCATTGTAGCTGCATTAGACGGAACATTCCAGAGGAA 327 Query 58223 GCCATTTGGAAATATTTTAAAATTAATACCATGTGCTGAGTACGTTTCA--AAGCTTACA 58280 | ||||| |||||||||| | ||||| |||||| | || ||| ||||| | Sbjct 328 GGGTTTTGGTGATATTTTAAATCTTGTACCACTTGCTGA--AAGTGTCATCAAGCTCAAC 385 Query 58281 GCCGTTTGCATGAATTGTTTTAA 58303 || || || ||| |||| | ||| Sbjct 386 GCTGTCTGTATGCATTGCTATAA 408 >seq36655 Length=16638 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 16549 CTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC-AGAGT 16607 ||||||||||||||| || ||||| ||||| | || || | ||| || ||||| || | Sbjct 6023 CTCCATTGCTATCTGGAAGCCATAGAAGCACTTGGCCTCTGGTATCTGAACTTCTTGACT 6082 Query 16608 AAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTA 16667 |||||||| | | ||| || || || || ||||| || |||||||| ||||| | | Sbjct 6083 -GAACCTTTCCACAAGGTTCTCATTCACGATACCATCACTTGCTGCAAAGAACGCCAACA 6141 Query 16668 TGTGTTTAATAAAAtttttttCGTT 16692 ||| ||| ||||| ||| ||||| Sbjct 6142 CGTGGGTAACAAAATGTTTCTCGTT 6166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 460645798768400