Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_002702.1 Length=32621 Score E Sequences producing significant alignments: (Bits) Value seq201746 80.6 6e-11 >seq201746 Length=230 Score = 80.6 bits (88), Expect = 6e-11 Identities = 150/212 (71%), Gaps = 9/212 (4%) Strand=Plus/Minus Query 5297 TCCAACTGGTCAGAAAACACTAtttttttGTTGTCTAATCTGGTGGCGAACGATCCGTAC 5356 |||| ||||||||||| || || |||| |||| | |||||| ||||| ||||| Sbjct 210 TCCATCTGGTCAGAAAG-ACAATCTTTTG--TGTCAGCTTGGGTGGCAAACGACCCGTAG 154 Query 5357 AGTGCGTTTGATAAAAGTTTGGCAATGCTT-CGCATGG--TTTGGTTCTTTTCCCTGTCT 5413 || ||||| || | | ||||| ||| |||| || ||||||| ||| | | || Sbjct 153 AGGGCGTTGGACAGCAACTTGGCGATGGGAGCGCAGGGGTTTTGGTT-TTTGCGCGATCG 95 Query 5414 GCCTTTTCCTTTGCTGCGATGTTCAGCTGCACGTACTCTTTGGCCAAGCATTTCCATTCC 5473 || ||||| || |||||||| ||||||||||| || || | ||| ||||| | Sbjct 94 GCGCGCTCCTTGGCCGCGATGTTTAGCTGCACGTATTCGCGCGCAACGCACCGCCATT-C 36 Query 5474 GGGAAAATGGTAGTGCGTTCATCAGGCACAAG 5505 |||||| ||| ||||| || || ||||| || Sbjct 35 GGGAAAGCGGT-GTGCGCTCGTCGGGCACCAG 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 103865931317724