Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq80839 102 6e-17 seq233793 98.7 8e-16 seq15040 96.9 3e-15 seq33451 95.1 1e-14 seq177272 89.7 4e-13 seq172955 86.0 5e-12 seq301046 82.4 6e-11 >seq80839 Length=604 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| ||||||||||| || ||| | || || || || || || ||||| Sbjct 194 TCCTTCTGGATGTTGTAGTCTGATAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCGAAG 135 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 ||||| ||||| ||||| ||||| | ||| || || ||| || || ||| || | Sbjct 134 ATCAAACGCTGCTGGTCAGGAGGAATACCTTCTTTATCCTGGATCTTAGCCTTGACATTC 75 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | |||| | ||||||||| | ||| || |||||||||||||| |||||||| Sbjct 74 TCTATGGTGTCAGAAGGCTCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACG 15 Query 45326 AAGATTTGCAT 45336 || || ||||| Sbjct 14 AATATCTGCAT 4 >seq233793 Length=42987 Score = 98.7 bits (108), Expect = 8e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| ||||||||||| || ||| |||| |||||||| || || ||||| Sbjct 13509 CTCCTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCGTCCTCCAGTTGCTTGCCAGCGAA 13568 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | ||||| || || || || | || ||||||||| ||| ||| ||| || Sbjct 13569 GATGAGACGCTGCTGATCAGGGGGGATGCCTTCCTTGTCCTGAATCTTTGCCTTTACGTT 13628 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | |||| | ||| ||||| | || || |||||||| || || |||||||| Sbjct 13629 CTCGATGGTGTCACTTGGCTCAACCTCAAGAGTTATGGTCTTGCCTGTGAGGGTCTTCAC 13688 Query 45325 AAAGATTTGCAT 45336 ||||| ||||| Sbjct 13689 GAAGATCTGCAT 13700 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| ||||||||||| || ||| |||| || ||||| || || ||||| Sbjct 11569 CTCCTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCGTCCTCGAGTTGCTTGCCAGCGAA 11628 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | ||||| || || || || | || ||||||||| ||| ||| ||| || Sbjct 11629 GATGAGACGCTGCTGATCAGGGGGGATGCCTTCCTTGTCCTGAATCTTTGCCTTTACGTT 11688 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | |||| | ||| ||||| | || || |||||||| || || ||||| || Sbjct 11689 CTCGATGGTGTCACTTGGCTCAACCTCAAGAGTGATGGTCTTGCCTGTGAGGGTCTTGAC 11748 Query 45325 AAAGATTTGCAT 45336 ||||| ||||| Sbjct 11749 GAAGATCTGCAT 11760 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 |||||| || ||||||||||| || ||| |||| || ||||| || || ||||| Sbjct 12826 CTCCTTTTGGATGTTGTAGTCTGATAGAGTGCGGCCGTCCTCGAGTTGCTTGCCAGCGAA 12885 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | ||||| || ||||| || | || ||||||||| ||| ||| ||| || Sbjct 12886 GATGAGACGCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGAATCTTTGCCTTTACATT 12945 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | |||| | ||| ||||| | || || |||||||| || || ||||| || Sbjct 12946 CTCGATGGTGTCACTTGGCTCAACCTCAAGAGTGATGGTCTTGCCTGTGAGGGTCTTGAC 13005 Query 45325 AAAGATTTGCAT 45336 ||||| ||||| Sbjct 13006 GAAGATCTGCAT 13017 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| ||||||||||| || ||| |||| || ||||| || || ||||| Sbjct 13281 CTCCTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCGTCCTCGAGTTGCTTGCCAGCGAA 13340 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | ||||| || ||||| || | || ||||||||| ||| || ||| || Sbjct 13341 GATGAGACGCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGAATCTTAGCCTTTACGTT 13400 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | |||| | ||| ||||| | || || |||||||| || || ||||| || Sbjct 13401 CTCAATGGTGTCACTTGGCTCAACCTCAAGAGTGATGGTCTTGCCTGTGAGGGTCTTGAC 13460 Query 45325 AAAGATTTGCAT 45336 ||||| ||||| Sbjct 13461 GAAGATCTGCAT 13472 Score = 86.0 bits (94), Expect = 5e-12 Identities = 135/192 (70%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| ||||||||||| ||| ||| | || |||||||| || || ||||| Sbjct 13054 CTCCTTCTGGATGTTGTAGTCTGACAGAGTGCGGCCATCTTCCAGTTGCTTGCCAGCGAA 13113 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | ||||| || || || || | || |||||||| || | ||||| | || Sbjct 13114 GATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTCTTGAA-TCTTTGCCTTACATT 13172 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | |||| | ||| ||||| | || || |||||||| || || ||||| || Sbjct 13173 CTCGATGGTGTCACTTGGCTCAACCTCAAGAGTGATGGTCTTGCCTGTGAGGGTCTTGAC 13232 Query 45325 AAAGATTTGCAT 45336 ||||| ||||| Sbjct 13233 GAAGATCTGCAT 13244 >seq15040 Length=705 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| ||||||||||| || ||| |||| || ||||| ||||| ||||| Sbjct 512 TCCTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCGTCCTCGAGTTGCTTTCCAGCGAAG 453 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 || | ||||| || ||||| || | || ||||||||| ||| ||| ||| || | Sbjct 452 ATTAGACGCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGAATCTTTGCCTTTACATTC 393 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | |||| | ||| ||||| | || || |||||||| || || ||||| || Sbjct 392 TCGATGGTGTCACTTGGCTCAACCTCGAGAGTGATGGTCTTGCCTGTGAGGGTCTTGACG 333 Query 45326 AAGATTTGCAT 45336 ||||| ||||| Sbjct 332 AAGATCTGCAT 322 >seq33451 Length=524 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| ||||||||||| || |||| |||| || ||||| || || ||||| Sbjct 331 CTCCTTCTGGATGTTGTAGTCTGATAGAGTGCGACCGTCCTCGAGTTGCTTGCCAGCGAA 272 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | ||||| || ||||| || | || ||||||||| |||| || | | || Sbjct 271 GATGAGACGCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGAATTCTTGTCCTTACATT 212 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | |||| | ||| ||||| | || || |||||||| || || ||||| || Sbjct 211 CTCGATGGTGTCACTTGGCTCAACCTCAAGAGTGATGGTCTTGCCAGTAAGGGTCTTGAC 152 Query 45325 AAAGATTTGCAT 45336 ||||| ||||| Sbjct 151 GAAGATCTGCAT 140 >seq177272 Length=310 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| ||||||||||| || ||| |||| |||||||| || || ||||| Sbjct 47 CTCCTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCGTCTTCCAGTTGCTTGCCAGCGAA 106 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | ||||| || || || || | || |||||||| ||| ||| ||| || Sbjct 107 GATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTTACATT 166 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | |||| | ||| ||||| | || || |||||||| || || ||||| || Sbjct 167 CTCGATGGTGTCACTTGGCTCAACCTCGAGAGTGATGGTCTTGCCAGTGAGGGTCTTGAC 226 Query 45325 AAAGATTTGCAT 45336 ||||| ||||| Sbjct 227 GAAGATCTGCAT 238 >seq172955 Length=397 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 |||||| || ||||||||||| || ||| | || || ||||| || || ||||| Sbjct 286 CTCCTTTTGGATGTTGTAGTCTGATAGAGTGCGGCCATCCTCGAGTTGCTTGCCAGCGAA 227 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | ||||| || ||||| || | || ||||||||| ||| ||| ||| || Sbjct 226 GATGAGACGCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGAATCTTTGCCTTTACATT 167 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | |||| | ||| ||||| | || || |||||||| || || ||||| || Sbjct 166 CTCGATGGTGTCGCTTGGCTCAACCTCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGAC 107 Query 45325 AAAGATTTGCAT 45336 ||||| ||||| Sbjct 106 GAAGATCTGCAT 95 >seq301046 Length=281 Score = 82.4 bits (90), Expect = 6e-11 Identities = 134/192 (70%), Gaps = 1/192 (1%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| ||||||||||| || ||| |||| || ||||| || || ||||| Sbjct 217 TCCTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCGTCCTCGAGTTGCTTGCCAGCGAAG 158 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCA-CACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | ||||| || ||||| || | || ||||||||| ||| || ||| || Sbjct 157 ATGAGACGCTGCTGATCGGGGGGAAGTGCCTTCCTTGTCCTGAATCTTAGCCTTTACGTT 98 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | |||| | ||| ||||| | || || |||||||| || || ||||| || Sbjct 97 CTCAATGGTGTCACTTGGCTCAACCTCAAGAGTGATGGTCTTGCCAGTAAGGGTCTTGAC 38 Query 45325 AAAGATTTGCAT 45336 ||||| ||||| Sbjct 37 GAAGATCTGCAT 26 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 393520953668674