Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq283656 86.0 5e-12 seq233793 82.4 6e-11 >seq283656 Length=776 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || ||||| |||| ||| || || || || || || || |||||||| | | Sbjct 561 CCACCACGGAGCCTAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCAGAC 620 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||||| || ||||| || |||| || | || ||||| || Sbjct 621 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCGGGAGGG 680 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||||| || ||||| ||| || | | ||| ||| |||| ||| || Sbjct 681 ATACCTTCCTTGTCTTGAATTTTGGCCTTTACATTTTCAATAGTATCACTGGGTTCCACC 740 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTAC 18313 || | ||||||| |||| || ||||||||||| || Sbjct 741 TCGAGGGTGATGGTTTTCCCCGTCAATGTTTTCAC 775 >seq233793 Length=42987 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/227 (68%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || || || || | || || ||||| || || || ||||||||||| | | Sbjct 13019 CCTCCACGGAGCCTGAGAACAAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGAC 13078 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||||| ||| ||||| || |||| || | || ||||| ||| Sbjct 13079 AGAGTGCGGCCATCTTCCAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGA 13138 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||| || ||| | |||| | || | | | ||||||| ||||| Sbjct 13139 ATGCCTTCCTTGTCTTGAATCT-TTGCCTTACATTCTCGATGGTGTCACTTGGCTCAACC 13197 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| |||||| | ||||| || | || || || || || ||||| Sbjct 13198 TCAAGAGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATCTGCAT 13244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 377851641025530