Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_003157.5 Length=43106 Score E Sequences producing significant alignments: (Bits) Value seq308241 376 7e-100 seq49753 340 5e-89 >seq308241 Length=684 Score = 376 bits (416), Expect = 7e-100 Identities = 495/683 (72%), Gaps = 5/683 (1%) Strand=Plus/Plus Query 25526 GCTCAAGCTCACATTGCAAGTCTTAAGTATAAGCTAGGAGATGAGCGAAAAGTTTGGCAT 25585 || ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1 GCCCAAGCCCACATTGCAAGTCTTAAGTATAAGCTAGGAGATGAGCGAAAAGTATGGCAT 60 Query 25586 TTGATTGTATCGGCTGATGGGAAAACCCAGTGGCTAGGGGTTGCAACAGTGACAGAAATT 25645 || |||||| | || || || |||| || ||| | || || |||||||| ||||||||| Sbjct 61 TTAATTGTAGCAGCAGACGGTAAAA-ACAATGGTTGGGCGTAGCAACAGTAACAGAAATT 119 Query 25646 ATTGCTGGTTCTGGTGCTGCCGCCGATTTTGAAGCCTTTGGTTGCAAGATTACTTATAAC 25705 |||||||| ||||| ||||| || ||||||||||| |||||||| ||||| || || || Sbjct 120 ATTGCTGGGTCTGGAGCTGCGGCAGATTTTGAAGCTTTTGGTTGTAAGATCACCTACAAT 179 Query 25706 TCTCTGCCAAAGGAAAGCAAGGAAATTATACCTaaaaaaaaTGA-ATTGAGCGTAGCGAT 25764 || | ||||| ||||| ||||| | | || ||||| || | | | | ||| Sbjct 180 ACTTTACCAAAAGAAAGTTCAGAAATGACGCTAAAGAAAAAAGAGAATAGTTTTCGAGAT 239 Query 25765 GTGAGACA---AGGGTGGGCTAAACCACCCTTTTAAGGAGGAATTATGTCTGGAATTGTA 25821 || | | | || || ||| | | || ||||||| ||||| |||| Sbjct 240 GTAATAGAGTCAGCGTAAGCTGACTCTTATTTATAAGGAGATGACATGTCAATAATTAAT 299 Query 25822 GTTGACCTAAAGCGCACAGGGTTTCCGGTCAAAATTGGGCAGGTAGAGCTTTGGTTTGAT 25881 |||| || ||||| ||||| || || || |||||||| | || |||||||| ||| Sbjct 300 ATTGATCTTAAGCGTACAGGCTTCCCTGTAAAAATTGGAGTAATTGAACTTTGGTTCGAT 359 Query 25882 ACAAGCCAAGAGCGATTGATTGAGTTTTTTGATATTGAGACAGAAGTAAATCGTCGCCTC 25941 || || || ||||| | |||||||||||||| | ||| | || || ||||| | Sbjct 360 ACCAGTCAGGAGCGGCTACTTGAGTTTTTTGATGTAGAGGCCGAGGTTTCACGTCGTTTT 419 Query 25942 AATGAATACGAAAAACAGGTTATCGAAGCCAACTTAGACAACGAAATTGAAGGTAAAGGG 26001 || || |||||||||||| |||| ||||| ||| | ||| |||||||| ||||| Sbjct 420 AACGAGTACGAAAAACAGATTATTGAAGCAAACCTCAGCAAGAGAATTGAAGACGAAGGG 479 Query 26002 GTTACGAAAGATGTTGCCCAAAGTGCTTTAGATTTGGAAGCTAAATACTTAGAAATCAAT 26061 | || ||||| ||||| | | ||||||||||| ||| | |||||| ||||||| ||| Sbjct 480 CTCACCAAAGAAGTTGCTAAGGGCGCTTTAGATTTAGAAACAAAATACCTAGAAATTAAT 539 Query 26062 TATGATCTACTATTCGGAGAAGGTACATTTGCACAGCTCTACGCGGAGTATCCCGACAAA 26121 || || || ||||| ||||| || || ||| |||| || | || || |||||| Sbjct 540 TACGACCTGCTATTTGGAGACGGAACTTTTAATAAGCTTTATGAAACTTACCCTGACAAA 599 Query 26122 GAAGCACTCGAGAATACTCTGGAAATTGTTTGCAGGGAAATCGAGGTCAAACTCAAAGAG 26181 || || ||||||| ||||| ||| |||| | ||||||| ||| || || || || Sbjct 600 GAGGCGCTCGAGAGCACTCTTGAAGTTGTCTCTAGGGAAAATGAGCAAAAGCTGAATGAA 659 Query 26182 TTAGCTATCGAAAGAGAAAAAAT 26204 ||| ||| || | ||||||| Sbjct 660 TTAAAAATCAAACGCCAAAAAAT 682 >seq49753 Length=252 Score = 340 bits (376), Expect = 5e-89 Identities = 228/253 (90%), Gaps = 1/253 (0%) Strand=Plus/Plus Query 17172 AGATAGCCTGGATAGAAAAGAACAAAGACAGCGAATTAAGGCCGCGGAGCTCACCACAGA 17231 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AGATAGCCTGGATAGAAAAGAACAAAGACAGCGAATTAAGGCCGCGGAGCTCACCACAGA 60 Query 17232 CGAGCAACGAACGCGCATCGAGCTGCTTAAAGTCAAACTTGACGCAGAGAAAGGCGCTAA 17291 |||||| ||||| || || ||||| ||||||||||| || || || || |||||| |||| Sbjct 61 CGAGCAGCGAACACGTATTGAGCTTCTTAAAGTCAAGCTCGATGCTGAAAAAGGCTCTAA 120 Query 17292 GCCTGATACTAGCTTAATGAAAGCTTTGTTAGATGCTGTGGAAGGAGGTGATTAGCCTTG 17351 |||||||||||||||||||| |||||||||||||||||| || |||| ||||||| || Sbjct 121 GCCTGATACTAGCTTAATGAGAGCTTTGTTAGATGCTGTTGAGGGAGATGATTAG-AATG 179 Query 17352 GAGATTATCTTTTCAAATAAACAAAAAGACGTCATTAGACGCCATTTTAACTACGAATTA 17411 ||||| | |||||||| || ||||||||| |||||||||||| |||||||||||||||| Sbjct 180 CAGATTGTATTTTCAAACAAGCAAAAAGACATCATTAGACGCCCTTTTAACTACGAATTA 239 Query 17412 GAGGTCAACGAGG 17424 ||||||||||||| Sbjct 240 GAGGTCAACGAGG 252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137289320504304