Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq295142 91.5 3e-13 seq302008 84.2 4e-11 seq197649 84.2 4e-11 >seq295142 Length=2525 Score = 91.5 bits (100), Expect = 3e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 ||||| || || ||||| || || |||||||| ||| | || || | || |||||| Sbjct 1942 GTTGCTTTCGCAGCAGTAGAGGGCATCTTCTTCTCGGGTTCCTTTGCCGCAATCTTCTGG 1883 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 ||||||| | ||| | |||| || || |||| ||| ||||| |||| || ||| Sbjct 1882 CTCAAGAAACGAGGTCTGATGCCAGGGCTTACCTTCTCAAATGAACTCATCAGCAGAGAC 1823 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAA 102075 || |||||||| ||||||||||||| || |||| || Sbjct 1822 GAGGGTCTTCACTGCGACTTTGCATGTCTGATGTTCAA 1785 >seq302008 Length=60799 Score = 84.2 bits (92), Expect = 4e-11 Identities = 121/168 (72%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 35396 GGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGA-TAC 35454 || ||| | || || || || || ||||| ||||| ||||||||||| || || | | Sbjct 9932 GGTGATCTTGGTCCAGTCTATGGGTTCCAGTGGCGCCATTTTGGTGCCGAGTACAAGGAT 9873 Query 35455 CTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCT 35514 | ||| ||||||| | || || || | ||||| | |||||| | | |||||| | Sbjct 9872 CGATTC-ACCGATTACTCGGGTAAAGGCGTCGATCAGCTTGCCAATGTTATCAAGACCAT 9814 Query 35515 GAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCC 35562 ||||| ||||| |||||||| ||||| || ||| | || ||||| || Sbjct 9813 CAGAGAGAATCCGGATGATAGGAGGATTATCATGTCTGCTTGGAACCC 9766 >seq197649 Length=5997 Score = 84.2 bits (92), Expect = 4e-11 Identities = 121/168 (72%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 35396 GGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGA-TAC 35454 || ||| | || || || || || ||||| ||||| ||||||||||| || || | | Sbjct 536 GGTGATCTTGGTCCAGTCTATGGGTTCCAGTGGCGCCATTTTGGTGCCGAGTACAAGGAT 595 Query 35455 CTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCT 35514 | ||| ||||||| | || || || | ||||| | |||||| | | |||||| | Sbjct 596 CGATTC-ACCGATTACTCGGGTAAAGGCGTCGATCAGCTTGCCAATGTTATCAAGACCAT 654 Query 35515 GAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCC 35562 ||||| ||||| |||||||| ||||| || ||| | || ||||| || Sbjct 655 CAGAGAGAATCCGGATGATAGGAGGATTATCATGTCTGCGTGGAACCC 702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 985491280348270