Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_003266.2 Length=35994 Score E Sequences producing significant alignments: (Bits) Value seq201746 190 5e-44 >seq201746 Length=230 Score = 190 bits (210), Expect = 5e-44 Identities = 186/230 (81%), Gaps = 10/230 (4%) Strand=Plus/Minus Query 6021 ATGCCTTTCAAGAGCCCCTCGTCCATCTGGTCAGAAAAGACAATCTTTTTGTTGTCGAGT 6080 |||||||| | | | || | |||||||||||||||| ||||||||||| |||| | Sbjct 230 ATGCCTTTGAGG-GTGCCGCATCCATCTGGTCAGAAA-GACAATCTTTTG--TGTCAGCT 175 Query 6081 TTGGTGGCGAAGGAGCCGTAGAGGGCGTTGGAGAGGAGCTTGGCGATGG-AGCGCATGG- 6138 | |||||| || || ||||||||||||||||| || | ||||||||||| |||||| || Sbjct 174 TGGGTGGCAAACGACCCGTAGAGGGCGTTGGACAGCAACTTGGCGATGGGAGCGCAGGGG 115 Query 6139 -TCTGGTTCTTTTCCTTGTCGGCGCGCTCCTTGGCGGCGATGTTGAGCTGCACGTACTCG 6197 | ||||| ||| | ||||||||||||||||| |||||||| ||||||||||| ||| Sbjct 114 TTTTGGTT-TTTGCGCGATCGGCGCGCTCCTTGGCCGCGATGTTTAGCTGCACGTATTCG 56 Query 6198 CGCGCCACGCACTTCCATTCGGGGAAGACGGTGGTTAGCTCGTCTGGCAC 6247 ||||| |||||| ||||||||| ||| |||| || ||||||| ||||| Sbjct 55 CGCGCAACGCACCGCCATTCGGGAAAG-CGGT-GTGCGCTCGTCGGGCAC 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114618157519568