Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_003309.1 Length=53373 Score E Sequences producing significant alignments: (Bits) Value seq104363 295 2e-75 >seq104363 Length=468 Score = 295 bits (326), Expect = 2e-75 Identities = 349/468 (75%), Gaps = 6/468 (1%) Strand=Plus/Plus Query 33595 TGCCGACTGAGGGCTCGATGCCGGCCTCAGCCAGCCGTTCGCTGTAGCGAATGCTGACGT 33654 |||| |||||||| |||||||||||||||||||| |||||| ||||||||||| | || Sbjct 1 TGCCTACTGAGGGTTCGATGCCGGCCTCAGCCAGTCGTTCGGTGTAGCGAATGGACAGGT 60 Query 33655 ATTGAGACCCCCTGTCGGAATGATGAATCAAAGTCCCGTCCTCGCCCGGTTGGCGGGCGT 33714 |||| ||||| | ||| || || || | | | |||| ||| ||||| |||| | | Sbjct 61 ATTGCGACCCGCGGTCCGAGTGGTGCACGAGGCTGTCGTCTTCGGTCGGTTTGCGGTCAT 120 Query 33715 ACAGCGCTTGTTCAAGTGCATCCAGAACAAAGTCCGTGGTCATCGACGAGCTGACCCGCC 33774 ||||||| || || || || || || || || || ||| |||||| ||| |||| Sbjct 121 ACAGCGCCTGCTCCAGCGCGTCGAGCACGAACTCGGTGTGCATCGAACTGCTCTGGCGCC 180 Query 33775 AGCCAACAATACGGCGGGCGAACACGTCGATCACGAATGCCACGTACAGCCAGCCTTGCC 33834 |||| || || || ||| ||||||||| | |||||||||||| || | |||||| |||| Sbjct 181 AGCCCACGATGCGCCGGCTGAACACGTCCACCACGAATGCCACATAGACCCAGCCCTGCC 240 Query 33835 ATGTCGAGACATACGTAAAATCCGACACCCAGAGCTGATTCGGTCGGTCAGCCTTGAACT 33894 | |||||||| ||||| || ||||| ||||| ||||| || || || || || ||||| Sbjct 241 AGGTCGAGACGTACGTGAAGTCCGAGACCCACAGCTGGTTGGGCCGCTCGGCACGGAACT 300 Query 33895 GCCGGTTGACTCGGTCCAGCGGGCGCGGCGCGGTCACATCGGTAATCGTCGTGCGAACAC 33954 |||||||||| ||||||||||||| ||||| || ||||| || || || || || Sbjct 301 GCCGGTTGACCCGGTCCAGCGGGCATGGCGCCTTCGGATCGGGAACGGTGGTTCGCACGG 360 Query 33955 GCTTACCGCGAACTGCGCCACGCAAGCCCTGCAGCT---TCATCAACCGTCCGACCGTGC 34011 ||| ||||| |||| || ||||| | |||| ||||| || |||| |||| Sbjct 361 CCTTGCCGCGGCGCACGCCCTGC-AGCCCCG-AGCTGGCGCATCAGTCGCTCGACGGTGC 418 Query 34012 AGCGTGCCACCGTAATGCCTTCCCGGTTCATCT-GCTTCCAGACCTTC 34058 |||| ||||||| | ||| |||||||| | || || |||||||||| Sbjct 419 AGCGCGCCACCGCGACGCCCTCCCGGTTGAGCTGGCGCCCAGACCTTC 466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170017783716380