Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq295142 311 1e-79 seq305029 210 3e-49 seq129531 203 4e-47 seq289945 149 8e-31 seq256343 91.5 2e-13 seq140081 82.4 1e-10 >seq295142 Length=2525 Score = 311 bits (344), Expect = 1e-79 Identities = 608/893 (68%), Gaps = 13/893 (1%) Strand=Plus/Plus Query 33278 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33337 |||||||||||| ||||||||||| || || || || || || || |||||||| Sbjct 1493 CATAACTCCCATCAGCTGGTATTCACCGACCTTCTTCTCAAAGAAGTTCGTCTTTCCTTC 1552 Query 33338 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCC 33397 || || || ||||||||||| || || || || ||||| | || |||||| | | Sbjct 1553 CAGCGAGATGTTTTCCATGAAGTCGAATGGGTTCTCGACATTCCAGATCTTTTTACAGTC 1612 Query 33398 CAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATT 33457 | ||| || ||| || || || || || || || || || ||||| | | ||| Sbjct 1613 AAGCTCAACAAGCAACCTGTCGGCTACAAACTCGATGTAGGTCTTCATGAGGCCGGCATT 1672 Query 33458 CATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGC 33517 ||| || ||||| || ||||| | || || || || ||||| || ||||| Sbjct 1673 CATACCGATGAGAGAGCAGGGTAGAGCGTCCGTCAGGAACTCCTGTTCGATCTTAACCGC 1732 Query 33518 ATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGAT-GTAAT--AAATGTTTAAA 33574 | | || || || |||| || ||| | || | | ||| || || Sbjct 1733 TTCCCTGATGATCCCCTGGACATGAGCTTC---CGATGGCTTGTTGTTGAGATGCTTGAA 1789 Query 33575 CATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAA 33634 ||||| |||||| || |||||||| |||||||||||||| || || | ||| || || || Sbjct 1790 CATCAGACATGCAAAGTCGCAGTGAAGACCCTCGTCTCTGCTGATGAGTTCATTTGAGAA 1849 Query 33635 CGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGA 33694 || || || ||||| || || || || || ||||| || || | || || || || || Sbjct 1850 GGTAAGCCCTGGCATCAGACCTCGTTTCTTGAGCCAGAAGATTGCGGCAAAGGAACCCGA 1909 Query 33695 AAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTC 33754 |||||||| || |||||||| || || |||| | || ||| | | |||||||| Sbjct 1910 GAAGAAGATGCCCTCTACTGCTGCGAAAGCAACGACCCTTGTACCAAAGTCTGCGCTGTC 1969 Query 33755 ---ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 33811 | ||||| | | ||||| | || ||||| | ||||| ||||| || || | Sbjct 1970 GCTACTGATCCAGTCCAGCGCCCATTGCGCTTTCTTGGTGACACACGGCATGGTCTCAAC 2029 Query 33812 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCA--AAAGA 33869 |||||| ||||| || | | | | | |||||| | || || ||||| | || || Sbjct 2030 GGCATTGAAGAGGTAATCTCTCTGAGCTGAATCTTTGATGTATGTGTCGATGAGTAATGA 2089 Query 33870 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33929 ||||||||| || || ||||||||||| || ||||| || ||||||||||| || ||| Sbjct 2090 --ATACATTTCTGAGTGGATGTTTTCAATTGCAATCTGGAACCCGTAGAAACACCTCGCC 2147 Query 33930 TCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCA 33989 || | ||||||||||||| | ||| | ||| | || || ||||| || || ||||| Sbjct 2148 TCTGCAATCTGCACTTCTTGGCTAAACCTTTCAACCAAGTTCTCATTGACAATACCATCG 2207 Query 33990 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA 34049 || || || || || || | ||||| || || | | || | ||| || || Sbjct 2208 CTTGCAGCGAAGAAAGCAAGAACATGCGAGATGAAGTGCCTCTCATTGTCTGTGAGCTTG 2267 Query 34050 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 34109 ||||| | | ||||| || | ||| || || || | ||||| || |||||||| Sbjct 2268 GCCCAATGGTCCAAGTCTTTGGAAAGATCGACCTCCTCGGCCGTCCAGAAGGATGCCTCC 2327 Query 34110 GCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 ||||| || || | | ||||||||||||||||||||| ||||| || ||||| Sbjct 2328 GCCTTCTTGTAGAATTGCCAGATGTCATGATATTGGATGGGGAAGATGACAAA 2380 >seq305029 Length=127772 Score = 210 bits (232), Expect = 3e-49 Identities = 375/538 (70%), Gaps = 16/538 (3%) Strand=Plus/Minus Query 62970 ACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTT 63029 ||||||| || | | ||| | || ||||| || || || ||||| || ||||| ||| Sbjct 94094 ACCTCATCAGGACTTGAATACTCTACGATCTCTGTACACAGGTTACTGCATTTGATGGTT 94035 Query 63030 CCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTA 63089 || || |||||||| |||||||| ||||||| ||||| || || || |||| ||| Sbjct 94034 CCCAAGTTTTGTTGGTTACTCTTCCTGTTACAATGGTCCTTGTACAGCATATATGGGGTA 93975 Query 63090 CCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGAT 63149 ||||| || | |||||||| || || || | ||| | | | ||||| ||| | | Sbjct 93974 CCAGTCTCTGTTTGAGATTCAATGATGGCATACCACAGAGCCTGGGCCTTCATTGTC--T 93917 Query 63150 TTGTATCTCCTTTC--TCTTTCGTATAGA----GTATACAATCGTTCGAACTCGTCTCCC 63203 | || | ||||| |||||| ||| ||| | | ||| || || |||||| Sbjct 93916 TCCTACC--CTTTCCTTCTTTCTCATACTTCTCGTAGAGCTT--TTCAAATTCATCTCCC 93861 Query 63204 CAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCC 63263 ||||| || || | | ||| ||||||| || ||||| | | ||| || || ||| | Sbjct 93860 CAAACGTTTTCTAGGCCAGGGCATTCATGAGGGCACATGAGGGTCCAGTCACCATCAGCT 93801 Query 63264 TTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCT 63322 | || | ||||||||||||||||| ||||| || || ||| || ||||||| | ||| Sbjct 93800 TCAACCCTCTTCATAAAGAGATCAGGGATCCAGAGGGC-ATAGAACAGATCTCGGGCTCT 93742 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 |||||||| || || ||||| ||| || | ||| | ||||||| |||||| Sbjct 93741 CTGTTCCTCCTTGCCGTGGTTCTTCTTACAGTCTAAGAAATCATGGATATCAGCATGCCA 93682 Query 63383 CGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCT 63442 || || | ||| ||||| | | ||||| || || || ||||||||||||| ||||| Sbjct 93681 TGGCTCTAGGTAGATGGCAAAGGCACCAGGACGCTTATTGCCTCCCTGATCTACATATCT 93622 Query 63443 AGCGGTGTTATTATAAACTCTCAACATTGG-AATAATACCGTTTGATATACCATTGGT 63499 ||| || || || || || | | |||||| ||||| ||| || || | ||||| || Sbjct 93621 AGCTGTATTGTTGTACACACGAAGCATTGGTAATAA-ACCATTGGAGTTGCCATTTGT 93565 Score = 86.0 bits (94), Expect = 8e-12 Identities = 111/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 63188 TTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGA 63247 ||| || || ||||||||||| || || | | ||| ||||||| || ||||| | | Sbjct 92218 TTCAAATTCATCTCCCCAAACGTTTTCTAGGCCAGGGCATTCATGAGGGCACATGAGTGT 92159 Query 63248 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 63306 ||| || || || | | || | ||||| ||||||||||| ||||| || || ||| | Sbjct 92158 CCAGTCACCATCGGCTTCAACCCTCTTCATGAAGAGATCAGGGATCCAGAGGGC-ATAGA 92100 Query 63307 ATAGATCTCTTGTTCTATGTTCCTCGTTTCC 63337 |||| ||||| | ||| |||||||| || || Sbjct 92099 ATAGGTCTCTAGCTCTCTGTTCCTCCTTGCC 92069 >seq129531 Length=564 Score = 203 bits (224), Expect = 4e-47 Identities = 278/386 (72%), Gaps = 7/386 (2%) Strand=Plus/Minus Query 33566 ATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTC 33625 |||||| ||||||| ||| || || |||||||| |||||||||||||| || || | ||| Sbjct 384 ATGTTTGAACATCAGACAGGCAAAGTCGCAGTGAAGACCCTCGTCTCTGCTGATGAGTTC 325 Query 33626 GTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAA 33685 || || || || || || ||||| || || || || || ||||| || || | ||| || Sbjct 324 ATTTGAGAAGGTAAGCCCTGGCATCAGACCTCGTTTCTTGAGCCAGAAGATCGCAGCAAA 265 Query 33686 TGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACC 33745 || || || |||||||| || |||||||| || || |||| | || ||| | | Sbjct 264 GGAACCCGAGAAGAAGATGCCCTCTACTGCTGCGAAAGCAACGACCCTTGTGCCAAAGTC 205 Query 33746 GGCGCTGTC---ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 33802 |||||||| | ||||| | ||||| | || ||||| | || || ||||| Sbjct 204 TGCGCTGTCGCTACTGATCCAGTCCAACGCCCATTGTGCTTTCTTGGTGACGCATGGCAT 145 Query 33803 CGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGAT 33862 || || | |||||| ||||| || | | | | | |||||| | || || ||||| Sbjct 144 GGTCTCAACGGCATTGAAGAGGTAATCTCTCTGAGCTGGATCTTTGATGTATGTGTCGAT 85 Query 33863 CA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAA 33920 | || || ||||||||| || || ||||||||||| || ||||| || ||||||||| Sbjct 84 GAGTAATGA--ATACATTTCTGAGTGGATGTTTTCAATTGCAATCTGGAACCCGTAGAAA 27 Query 33921 CATCTAGCCTCGGTAATCTGCACTTC 33946 || || ||||| | |||||||||||| Sbjct 26 CACCTTGCCTCTGCAATCTGCACTTC 1 >seq289945 Length=532 Score = 149 bits (164), Expect = 8e-31 Identities = 256/371 (69%), Gaps = 3/371 (1%) Strand=Plus/Minus Query 62076 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 62135 || || || || ||||| ||||| || ||||| |||||| | | || |||||||| Sbjct 381 GTGCGAAGGTAATACATACCCGTCTTCAGACCCGATCTCCATGCAAAGAAGTGCATACTG 322 Query 62136 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 62195 ||||| ||| ||| | || || || || || ||||| | |||||||| ||||| ||| Sbjct 321 GTTAGCTTGCCATAGTTTGGTTCAGCAATGTGAATATTAAGTGATTGACTCTGATCAATG 262 Query 62196 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTT 62255 | || || | ||| ||||||| | || | ||||| |||| || ||||||| ||| Sbjct 261 TATGCACCGCGGTCAACAGCCATCTGAATAACAGTCTTCTGTGAGATCTCCCAAACAGTC 202 Query 62256 TTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTA---TTCTGAATGGATCCACCATCT 62312 ||||| | | ||| || || ||||| | || | |||||||| |||||| | Sbjct 201 TTATACAATGCCTTGATGTCATCTGGGATTGATGGAATGTTCTGAATAGATCCAGAGTGA 142 Query 62313 ACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGG 62372 | || | | ||||||| ||||||||| ||| | | ||||| | | ||||| Sbjct 141 GCAATGAGCATATTCTTCATCTCATCAGACCACAGACCCATGTCGGTAAGGTCCCTAAGA 82 Query 62373 AGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTG 62432 ||||| | || || || || || ||||| || | || | || ||||| ||||||||| Sbjct 81 AGATGATGATTGACGACCTGAAACTCTCCTGAAAGCACACGACGCGTGTAGATATTACTG 22 Query 62433 GTATACGGTTC 62443 || ||||| || Sbjct 21 GTGTACGGCTC 11 >seq256343 Length=109058 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/108 (80%), Gaps = 4/108 (4%) Strand=Plus/Minus Query 33842 ATCTTTAACATAAGTATCGATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATG 33899 |||||| | || || ||||| | || || ||||||||| || || ||||||||||| Sbjct 30504 ATCTTTGATGTATGTGTCGATGAGTAATGA--ATACATTTCTGAGTGGATGTTTTCAATT 30447 Query 33900 GCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947 || ||||| || ||||||||||| || ||||| | ||||||||||||| Sbjct 30446 GCAATCTGGAACCCGTAGAAACACCTTGCCTCTGCAATCTGCACTTCT 30399 Score = 84.2 bits (92), Expect = 3e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 33969 TTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 34028 || ||||| || || ||||| ||||| ||||| || || | ||||| || || | Sbjct 29692 TTCTCATTGACGATACCATCGCTGGCAGCAAAGAAAGCAAGAACATGCGAGATGAAGTGC 29633 Query 34029 TTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCC 34088 | || | ||| || || ||||| | | ||||| || | ||| || || || Sbjct 29632 CTCTCATTGTCTGTGAGCTTGGCCCAATGTTCCAGGTCTTTGGAAAGATCGACCTCCTCG 29573 Query 34089 ACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATT 34148 | ||||| || |||||||| ||||| || || | | ||||||||| ||||||||||| Sbjct 29572 GCCGTCCAGAAGGATGCCTCGGCCTTCTTGTAGAATTGCCAGATGTCGTGATATTGGATG 29513 Query 34149 GGGAAAATAACAAA 34162 |||||||| || || Sbjct 29512 GGGAAAATGACGAA 29499 >seq140081 Length=702 Score = 82.4 bits (90), Expect = 1e-10 Identities = 145/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 80990 GTGATAGGTATCGATGAAGGACAGTTCTTTCCAGACATTGT-TGAA-TTCTGTGAGCGTA 81047 || ||||| ||||||||||| || || ||||| | ||||| |||| || ||||| | Sbjct 212 GTCATAGGAATCGATGAAGGCCAATTTTTTCCTG--ATTGTGTGAAGTTTTGTGAAGAAA 269 Query 81048 TGGCAAACGAAGGAAAAATAGTTATAGTAGCCGCGCTCGATGGGACATTTCAACGTAGAC 81107 |||| ||| ||| ||||| | || ||||| || | || || ||||| || | | Sbjct 270 TGGCCAACCTAGGCAAAATCATCATTGTAGCTGCATTAGACGGAACATTCCAGAGGAAGG 329 Query 81108 CGTTTAATAATATTTTGAATCTTATTCCATTATCTGAAATGGTGGTAAAACTAACTGCAG 81167 ||| | ||||||| |||||| | ||| | |||||| || | || || | || | Sbjct 330 GTTTTGGTGATATTTTAAATCTTGTACCACTTGCTGAAAGTGTCATCAAGCTCAACGCTG 389 Query 81168 TGTGTATGAAATGCTTTAAGGAGGCTTC 81195 | |||||| | |||| ||| || ||||| Sbjct 390 TCTGTATGCATTGCTATAACGAAGCTTC 417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627276333220320