Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq295142 203 3e-47 seq129531 167 2e-36 seq140081 84.2 2e-11 >seq295142 Length=2525 Score = 203 bits (224), Expect = 3e-47 Identities = 586/891 (66%), Gaps = 17/891 (2%) Strand=Plus/Plus Query 11330 ACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTAG 11388 || |||||| || ||||||| || | || | || || || || ||||| ||||| || Sbjct 1497 ACTCCCATCAGCTGGTATTCACCGAC-CTTCTTCTCAAAGAAGTTCGTCTTTCCTTCCAG 1555 Query 11389 TGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAA 11448 || || | ||||| ||| || || || | ||||| ||| |||| ||| | | Sbjct 1556 CGAGATGTTTTCCATGAAGTCGAATGGGTTCTCGACATTCCAGATCTTTTTACAGTCAAG 1615 Query 11449 CTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCAT 11508 ||| | || || || || || || || || || ||| | | |||||| Sbjct 1616 CTCAACAAGCAACCTGTCGGCTACAAACTCGATGTAGGTCTTCATGAGGCCGGCATTCAT 1675 Query 11509 ACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATC 11568 ||| || ||| || | ||| | |||| ||||||| ||| || |||||||| || Sbjct 1676 ACCGATGAGAGAGCAGGGTAGAGCGTCCGTCAGGAACTCCTGTTCGATCTTAACCGCTTC 1735 Query 11569 AATGATTATCGAC--GTTATAA-CTTCCTTAGATGG-TGGATGTAATAAATGTTTAAACA 11624 |||| ||| | | || | ||||| ||||| | | ||| | ||| || |||| Sbjct 1736 CCTGATGATCCCCTGGACATGAGCTTCC---GATGGCTTGTTGTTG-AGATGCTTGAACA 1791 Query 11625 TTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATG 11684 | | ||| ||||| || || || | ||| |||||||| || || |||||||| || || | Sbjct 1792 TCAGACATGCAAAGTCGCAGTGAAGACCCTCGTCTCTGCTGATGAGTTCATTTGAGAAGG 1851 Query 11685 TTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAA 11744 | | || ||||||| |||||||| || | ||| || || || ||||| ||||| || | Sbjct 1852 TAAGCCCTGGCATCAGACCTCGTTTCTTGAGCCAGAAGATTGCGGCAAAGGAACCCGAGA 1911 Query 11745 AGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA---TACCTTGTTGC 11801 |||| || ||||| || ||||| || || || || ||| ||| | | | ||| || Sbjct 1912 AGAAGATGCCCTCTACTGCTGCGAAAGCAACGACCCTTGTACCAAAGTCTGCGCTGTCGC 1971 Query 11802 TAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAG 11861 || ||||| | ||||| | |||||||| | || || ||| || || | | Sbjct 1972 TACTGATCCAGTCCAGCGCCCATTGCGCTTTCTTGGTGACACACGGCATGGTCTCAACGG 2031 Query 11862 CGTTAAATAAATGCATTTTTTCTATATT--ATCTCTTACATATGTATCTATTAATAAACT 11919 | || || | | | | | ||| | |||| | | ||||| || || | ||| Sbjct 2032 CATTGAAGAGGT--AATCTCTCTGAGCTGAATCTTTGATGTATGTGTCGATGAGTAATGA 2089 Query 11920 ATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTC 11979 |||||||||||| || || ||||| || || || || || || |||||||| | ||||| Sbjct 2090 ATACATTTCTGAGTGGATGTTTTCAATTGCAATCTGGAACCCGTAGAAACACCTCGCCTC 2149 Query 11980 TGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACT 12039 || | ||| || || ||| ||||| | || |||||||| ||||||||||| || Sbjct 2150 TGCAATCTGCACTTCTTGGCTAAACCTTTCAACCAAGTTCTCATTGACAATACCATCGCT 2209 Query 12040 AGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATC 12099 | || || || || || | ||| || |||| | || | | || | || | Sbjct 2210 TGCAGCGAAGAAAGCAAGAACATGCGAGATGAAGTGCCTCTCATTGTCTGTGAGCTTGGC 2269 Query 12100 CCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGA 12159 ||||| || || ||||| || | ||| || || || | ||||| || |||| | | Sbjct 2270 CCAATGGTCCAAGTCTTTGGAAAGATCGACCTCCTCGGCCGTCCAGAAGGATGCCTCCGC 2329 Query 12160 TTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAA 12210 | || || | || |||||| |||||||| | || ||||| || || || Sbjct 2330 CTTCTTGTAGAATTGCCAGATGTCATGATATTGGATGGGGAAGATGACAAA 2380 >seq129531 Length=564 Score = 167 bits (184), Expect = 2e-36 Identities = 322/467 (69%), Gaps = 15/467 (3%) Strand=Plus/Minus Query 11537 GTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATCGAC--GTTATAA-CTTCC 11593 |||| ||||||| ||| || || ||||| || |||| ||| | | || | ||||| Sbjct 461 GTCAGGAACTCCTGTTCGATCTTGACCGCTTCCCTGATGATCCCCTGGACATGAGCTTCC 402 Query 11594 TTAGATGG-TGGATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACC 11652 ||||| | | ||| | |||||| ||||| | ||| ||||| || || || | ||| Sbjct 401 ---GATGGCTTGTTGTTG-AGATGTTTGAACATCAGACAGGCAAAGTCGCAGTGAAGACC 346 Query 11653 TTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttt 11712 |||||||| || || |||||||| || || || | || ||||||| |||||||| || Sbjct 345 CTCGTCTCTGCTGATGAGTTCATTTGAGAAGGTAAGCCCTGGCATCAGACCTCGTTTCTT 286 Query 11713 tATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGC 11772 | ||| || || |||||||| ||||| || ||||| || ||||| || ||||| || || Sbjct 285 GAGCCAGAAGATCGCAGCAAAGGAACCCGAGAAGAAGATGCCCTCTACTGCTGCGAAAGC 226 Query 11773 TACTACTCTTTCTCCATA---TACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGC 11829 || || ||| ||| | | | ||| |||| ||||| | ||||| | || Sbjct 225 AACGACCCTTGTGCCAAAGTCTGCGCTGTCGCTACTGATCCAGTCCAACGCCCATTGTGC 166 Query 11830 TTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCATTTTTTCTATATT 11889 |||||| | |||||| ||| || || | || || || | | | | | ||| | Sbjct 165 TTTCTTGGTGACGCATGGCATGGTCTCAACGGCATTGAAGAGGT--AATCTCTCTGAGCT 108 Query 11890 --ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATA 11947 |||| | | ||||| || || | ||| |||||||||||| || || ||||| || Sbjct 107 GGATCTTTGATGTATGTGTCGATGAGTAATGAATACATTTCTGAGTGGATGTTTTCAATT 48 Query 11948 GCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATC 11994 || || || || || |||||||| | |||||||| | ||| || || Sbjct 47 GCAATCTGGAACCCGTAGAAACACCTTGCCTCTGCAATCTGCACTTC 1 >seq140081 Length=702 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 55877 GGAATAGACGAAGGACAATTCTTTAATGATATTGTAGAGTTTTGTGAATATATAGCAAAT 55936 ||||| || ||||| ||||| ||| |||| ||| ||||||||||| | || || || Sbjct 218 GGAATCGATGAAGGCCAATTTTTTCCTGATTGTGTGAAGTTTTGTGAAGAAATGGCCAAC 277 Query 55937 AAAGGAAAAATTGTTATCGTTGCTGCATTAGATGGAACATATGAACGTAAACCATTTGGT 55996 ||| ||||| | || || ||||||||||| ||||||| | | || |||||| Sbjct 278 CTAGGCAAAATCATCATTGTAGCTGCATTAGACGGAACATTCCAGAGGAAGGGTTTTGGT 337 Query 55997 AATATTCTTAATCTTATACCA 56017 ||||| | |||||| ||||| Sbjct 338 GATATTTTAAATCTTGTACCA 358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 466634337571360