Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq233793 100 3e-16 seq172955 100 3e-16 seq171612 98.7 1e-15 seq33451 98.7 1e-15 seq229213 95.1 1e-14 seq80839 95.1 1e-14 seq15040 95.1 1e-14 seq283656 91.5 1e-13 seq301046 84.2 2e-11 seq73885 84.2 2e-11 seq124407 82.4 8e-11 >seq233793 Length=42987 Score = 100 bits (110), Expect = 3e-16 Identities = 145/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| ||||| ||||| || || | |||| ||| ||||| || || ||| Sbjct 12821 GTTGACTCCTTTTGGATGTTGTAGTCTGATAGAGTGCGGCCGTCCTCGAGTTGCTTGCCA 12880 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 || |||| ||||| ||||||||||| || |||||||| ||||| ||| | |||| || Sbjct 12881 GCGAAGATGAGACGCTGCTGATCGGGGGGAATGCCTTCCTTGTC-CTGAATCTTTGCCTT 12939 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 || | || | ||||| | ||||| ||||||| || | |||||||| || | || Sbjct 12940 TACATTCTCGATGGTGTCACTTGGCTCAACCTCAAGAGTGATGGTCTTGCCTGTGAGGGT 12999 Query 139747 TTTTACGAATATTTGCATAGCT 139768 || ||||| || |||||| || Sbjct 13000 CTTGACGAAGATCTGCATACCT 13021 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || || | |||| ||| ||||| || || ||| Sbjct 13276 GTTGACTCCTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCGTCCTCGAGTTGCTTGCCA 13335 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 || |||| ||||| ||||||||||| || |||||||| ||||| ||| | || | || Sbjct 13336 GCGAAGATGAGACGCTGCTGATCGGGGGGAATGCCTTCCTTGTC-CTGAATCTTAGCCTT 13394 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 || | || | ||||| | ||||| ||||||| || | |||||||| || | || Sbjct 13395 TACGTTCTCAATGGTGTCACTTGGCTCAACCTCAAGAGTGATGGTCTTGCCTGTGAGGGT 13454 Query 139747 TTTTACGAATATTTGCATAGCT 139768 || ||||| || |||||| || Sbjct 13455 CTTGACGAAGATCTGCATACCT 13476 >seq172955 Length=397 Score = 100 bits (110), Expect = 3e-16 Identities = 145/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| ||||| ||||| || || | |||| || ||||| || || ||| Sbjct 291 GTTGACTCCTTTTGGATGTTGTAGTCTGATAGAGTGCGGCCATCCTCGAGTTGCTTGCCA 232 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 || |||| ||||| ||||||||||| || |||||||| ||||| ||| | |||| || Sbjct 231 GCGAAGATGAGACGCTGCTGATCGGGGGGAATGCCTTCCTTGTC-CTGAATCTTTGCCTT 173 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 || | || | |||||| | ||||| ||||||| || | |||||||| || | || Sbjct 172 TACATTCTCGATGGTGTCGCTTGGCTCAACCTCAAGAGTGATGGTCTTGCCAGTGAGGGT 113 Query 139747 TTTTACGAATATTTGCATAGCT 139768 || ||||| || |||||| || Sbjct 112 CTTGACGAAGATCTGCATACCT 91 >seq171612 Length=420 Score = 98.7 bits (108), Expect = 1e-15 Identities = 120/161 (75%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||| ||||| || || ||||| |||| ||||| |||||||| || || ||||||||||| Sbjct 414 GTCCTCGAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATGCCTTCTTT 355 Query 139669 GTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCA 139727 ||| ||| | |||| ||| | | || | |||||| | ||||| ||||||| || | Sbjct 354 GTC-CTGAATCTTTGCTTTGACATTCTCGATGGTGTCGCTTGGCTCAACCTCAAGAGTGA 296 Query 139728 CCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 |||||||| || | || || ||||| || |||||| || Sbjct 295 TGGTCTTGCCTGTGAGGGTCTTGACGAAGATCTGCATACCT 255 >seq33451 Length=524 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/204 (72%), Gaps = 6/204 (3%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA--GTCTTCGAGCTGTTTAC 139625 || ||||| || || ||||| || || | || | | ||| ||| ||||| || || | Sbjct 336 GTTGACTCCTTCTGGATGTTGTAGTC--TGATAGAGTGCGACCGTCCTCGAGTTGCTTGC 279 Query 139626 CAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGT- 139684 |||| |||| ||||| ||||||||||| || |||||||| ||||| ||| || |||| Sbjct 278 CAGCGAAGATGAGACGCTGCTGATCGGGGGGAATGCCTTCCTTGTC-CTGAATTCTTGTC 220 Query 139685 TTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAAC 139744 ||| | || | ||||| | ||||| ||||||| || | |||||||| || | Sbjct 219 CTTACATTCTCGATGGTGTCACTTGGCTCAACCTCAAGAGTGATGGTCTTGCCAGTAAGG 160 Query 139745 GTTTTTACGAATATTTGCATAGCT 139768 || || ||||| || |||||| || Sbjct 159 GTCTTGACGAAGATCTGCATACCT 136 >seq229213 Length=300 Score = 95.1 bits (104), Expect = 1e-14 Identities = 119/161 (74%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||| ||||| || || ||||| |||| ||||| ||||||||||| || |||||||| || Sbjct 3 GTCCTCGAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGGGGAATGCCTTCCTT 62 Query 139669 GTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCA 139727 ||| ||| | |||| |||| | || | ||||| | ||||| ||||||| || | Sbjct 63 GTC-CTGAATCTTTGCCTTTACATTCTCGATGGTGTCACTTGGCTCAACCTCAAGAGTGA 121 Query 139728 CCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 |||||||| || | || || ||||| || |||||| || Sbjct 122 TGGTCTTGCCAGTAAGGGTCTTGACGAAGATCTGCATACCT 162 >seq80839 Length=604 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || ||||| |||||| ||| ||||| || ||||| || |||||||| Sbjct 158 TCTTCAAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGAGGAATACCTTCTTTA 99 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||| | ||||||||||||| ||| | Sbjct 98 TCCTGGATCTTAGCCTTGACATTCTCTATGGTGTCAGAAGGCTCCACCTCAAGGGTGATA 39 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| |||| || || |||||||| ||||| Sbjct 38 GTCTTGCCCGTCAGGGTCTTCACGAATATCTGCAT 4 >seq15040 Length=705 Score = 95.1 bits (104), Expect = 1e-14 Identities = 119/161 (74%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||| ||||| || || ||||| |||| ||||| |||||||| || || ||||||||||| Sbjct 705 GTCCTCGAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATGCCTTCTTT 646 Query 139669 GTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCA 139727 ||| ||| | |||| ||| | | || | ||||| | ||||| ||||||| || | Sbjct 645 GTC-CTGAATCTTTGCTTTGACATTCTCGATGGTGTCACTTGGCTCAACCTCAAGAGTGA 587 Query 139728 CCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 |||||||| || | || || ||||| || |||||| || Sbjct 586 TGGTCTTGCCAGTAAGGGTCTTGACGAAGATCTGCATACCT 546 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||| || || || ||||| || || | |||| ||| ||||| || || ||| Sbjct 518 GTAGATTCCTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCGTCCTCGAGTTGCTTTCCA 459 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 || |||| ||||| ||||||||||| || |||||||| ||||| ||| | |||| || Sbjct 458 GCGAAGATTAGACGCTGCTGATCGGGGGGAATGCCTTCCTTGTC-CTGAATCTTTGCCTT 400 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 || | || | ||||| | ||||| ||||| | || | |||||||| || | || Sbjct 399 TACATTCTCGATGGTGTCACTTGGCTCAACCTCGAGAGTGATGGTCTTGCCTGTGAGGGT 340 Query 139747 TTTTACGAATATTTGCATAGCT 139768 || ||||| || |||||| || Sbjct 339 CTTGACGAAGATCTGCATACCT 318 >seq283656 Length=776 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | || ||||| || || || || || || || |||| ||||| Sbjct 579 ACCAAGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCAGACAGAGTGCGGCCATCTTCC 638 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| || || || ||||||| || |||||||||||||| || ||||| ||||| || Sbjct 639 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCGGGAGGGATACCTTCCTTGTC-TTG 697 Query 139676 ATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 | |||| | |||| | ||| | || || |||| |||||||| | ||| | || || Sbjct 698 AATTTTGGCCTTTACATTTTCAATAGTATCACTGGGTTCCACCTCGAGGGTGATGGTTTT 757 Query 139735 GCCGGTCAACGTTTTTACG 139753 || ||||| ||||| ||| Sbjct 758 CCCCGTCAATGTTTTCACG 776 >seq301046 Length=281 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/200 (71%), Gaps = 3/200 (2%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||| || || || ||||| || || | |||| ||| ||||| || || ||| Sbjct 223 GTAGATTCCTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCGTCCTCGAGTTGCTTGCCA 164 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTA-TGCCTTCTTTGTCGGTGATTTTTTG-TT 139685 || |||| ||||| ||||||||||| || | ||||||| ||||| ||| | || | | Sbjct 163 GCGAAGATGAGACGCTGCTGATCGGGGGGAAGTGCCTTCCTTGTC-CTGAATCTTAGCCT 105 Query 139686 TTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745 ||| | || | ||||| | ||||| ||||||| || | |||||||| || | | Sbjct 104 TTACGTTCTCAATGGTGTCACTTGGCTCAACCTCAAGAGTGATGGTCTTGCCAGTAAGGG 45 Query 139746 TTTTTACGAATATTTGCATA 139765 | || ||||| || |||||| Sbjct 44 TCTTGACGAAGATCTGCATA 25 >seq73885 Length=163 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||| ||||| || || ||||| |||| ||||| ||||||||||| || |||||||| || Sbjct 32 GTCCTCGAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGGGGAATGCCTTCCTT 91 Query 139669 GTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCA 139727 ||| ||| | |||| |||| | ||| | ||||| | ||||| ||||||| || | Sbjct 92 GTC-CTGAATCTTTGCCTTTACGTTTTCTATGGTGTCACTTGGCTCAACCTCAAGAGTGA 150 Query 139728 CCGTCTTGCCGGT 139740 |||||||| || Sbjct 151 TGGTCTTGCCTGT 163 >seq124407 Length=407 Score = 82.4 bits (90), Expect = 8e-11 Identities = 125/174 (72%), Gaps = 3/174 (2%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| ||||| ||||| || || | |||| ||| ||||| || || ||| Sbjct 174 GTTGACTCCTTTTGGATGTTGTAGTCTGATAGAGTGCGGCCGTCCTCGAGTTGCTTGCCA 115 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 || |||| ||||| ||||||||||| || |||||||| ||||| ||| | |||| || Sbjct 114 GCGAAGATGAGACGCTGCTGATCGGG-GGAATGCCTTCCTTGTC-CTGAATCTTTGCCTT 57 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 || | || | ||||| | ||||| ||||||| || | |||||||| || Sbjct 56 TACATTCTCGATGGTGTCACTTGGCTCAACCTCAAGAGTAATGGTCTTGCCAGT 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494062418964800