Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq295142 333 4e-86 seq305029 221 2e-52 seq129531 206 4e-48 seq289945 163 4e-35 seq140081 95.1 2e-14 seq256343 93.3 6e-14 seq289887 86.0 9e-12 seq306440 84.2 3e-11 >seq295142 Length=2525 Score = 333 bits (368), Expect = 4e-86 Identities = 613/893 (69%), Gaps = 13/893 (1%) Strand=Plus/Plus Query 49656 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 49715 |||||||||||| ||||||||||| || || || || || || || |||||||| Sbjct 1493 CATAACTCCCATCAGCTGGTATTCACCGACCTTCTTCTCAAAGAAGTTCGTCTTTCCTTC 1552 Query 49716 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCC 49775 || || || ||||||||||| || || || || ||||| | || |||||| | | Sbjct 1553 CAGCGAGATGTTTTCCATGAAGTCGAATGGGTTCTCGACATTCCAGATCTTTTTACAGTC 1612 Query 49776 CAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATT 49835 | ||| || ||| || || || ||||| || || || || ||||| | | ||| Sbjct 1613 AAGCTCAACAAGCAACCTGTCGGCTACAAACTCGATGTAGGTCTTCATGAGGCCGGCATT 1672 Query 49836 CATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGC 49895 ||| || || || || ||||| | || || || || ||||| || ||||| Sbjct 1673 CATACCGATGAGAGAGCAGGGTAGAGCGTCCGTCAGGAACTCCTGTTCGATCTTAACCGC 1732 Query 49896 ATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGAT-GCAAT--AAATGTTTAAA 49952 || | || || || |||| || ||| | | | | ||| || || Sbjct 1733 TTCCCTGATGATCCCCTGGACATGAGCTTC---CGATGGCTTGTTGTTGAGATGCTTGAA 1789 Query 49953 CATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAA 50012 ||||| |||||| || |||||||| |||||||||||||| || || ||||| || || || Sbjct 1790 CATCAGACATGCAAAGTCGCAGTGAAGACCCTCGTCTCTGCTGATGAGTTCATTTGAGAA 1849 Query 50013 CGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGA 50072 || || || ||||| || || || || || ||||| || || | ||||| || || || Sbjct 1850 GGTAAGCCCTGGCATCAGACCTCGTTTCTTGAGCCAGAAGATTGCGGCAAAGGAACCCGA 1909 Query 50073 AAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTC 50132 |||||||| || |||||||| || || ||||| | || ||| | |||||||| Sbjct 1910 GAAGAAGATGCCCTCTACTGCTGCGAAAGCAACGACCCTTGTACCAAAGTCTGCGCTGTC 1969 Query 50133 ---ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 50189 | ||||| | | ||||| | || ||||| | ||||| ||||| || || | Sbjct 1970 GCTACTGATCCAGTCCAGCGCCCATTGCGCTTTCTTGGTGACACACGGCATGGTCTCAAC 2029 Query 50190 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCA--AAAGA 50247 |||||| ||||| || | | | | | |||||| | || || ||||| | || || Sbjct 2030 GGCATTGAAGAGGTAATCTCTCTGAGCTGAATCTTTGATGTATGTGTCGATGAGTAATGA 2089 Query 50248 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 50307 ||||||||| || || ||||||||||| || ||||| || ||||||||||| || ||| Sbjct 2090 --ATACATTTCTGAGTGGATGTTTTCAATTGCAATCTGGAACCCGTAGAAACACCTCGCC 2147 Query 50308 TCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCA 50367 || | ||||||||||||| | ||| | |||| | || || ||||| || || || || Sbjct 2148 TCTGCAATCTGCACTTCTTGGCTAAACCTTTCAACCAAGTTCTCATTGACAATACCATCG 2207 Query 50368 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTA 50427 || || || || || || | ||||| || || || | || ||| ||| || || Sbjct 2208 CTTGCAGCGAAGAAAGCAAGAACATGCGAGATGAAGTGCCTCTCATTGTCTGTGAGCTTG 2267 Query 50428 TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCT 50487 ||||| | | ||||| || | ||| || || || | ||||| || |||||||| Sbjct 2268 GCCCAATGGTCCAAGTCTTTGGAAAGATCGACCTCCTCGGCCGTCCAGAAGGATGCCTCC 2327 Query 50488 GCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 50540 ||||| || || | | ||||||||||||||||||||| ||||| || ||||| Sbjct 2328 GCCTTCTTGTAGAATTGCCAGATGTCATGATATTGGATGGGGAAGATGACAAA 2380 >seq305029 Length=127772 Score = 221 bits (244), Expect = 2e-52 Identities = 377/538 (70%), Gaps = 14/538 (3%) Strand=Plus/Minus Query 79642 ACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTT 79701 ||||||| || | | ||| | || || || || || |||||||| || || |||||| Sbjct 94094 ACCTCATCAGGACTTGAATACTCTACGATCTCTGTACACAGGTTACTGCATTTGATGGTT 94035 Query 79702 CCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTA 79761 || || |||||||| |||||||| ||||||| ||||| || || || | || ||| Sbjct 94034 CCCAAGTTTTGTTGGTTACTCTTCCTGTTACAATGGTCCTTGTACAGCATATATGGGGTA 93975 Query 79762 CCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGAC 79821 ||||| || | |||||||| || || || | ||| | | | ||||| ||| | | Sbjct 93974 CCAGTCTCTGTTTGAGATTCAATGATGGCATACCACAGAGCCTGGGCCTTCATTGT---C 93918 Query 79822 TTGTATCTCTTTTCT-CTTTCGTATTGT----GTATATAATCGTTCGAACTCGTCTCCCC 79876 || | |||| || ||||| || | ||| | | ||| || || ||||||| Sbjct 93917 TTCCTACCCTTTCCTTCTTTCTCATACTTCTCGTAGAGCTT--TTCAAATTCATCTCCCC 93860 Query 79877 AAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCT 79936 |||| | |||| ||||| ||||| | ||| ||||| | | ||| || |||||| | | Sbjct 93859 AAACGTTTTCTAGGCCAGGGCATTCATGAGGGCACATGAGGGTCCAGTCACCATCAGCTT 93800 Query 79937 TTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTA 79995 || | ||||||||||||||||| ||||| || || ||| || ||||||| || ||| Sbjct 93799 CAACCCTCTTCATAAAGAGATCAGGGATCCAGAGGGC-ATAGAACAGATCTCGGGCTCTC 93741 Query 79996 TGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCAC 80055 || ||||| || || ||||| ||| || | ||| | ||||||| |||||| Sbjct 93740 TGTTCCTCCTTGCCGTGGTTCTTCTTACAGTCTAAGAAATCATGGATATCAGCATGCCAT 93681 Query 80056 GGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTA 80115 || || | ||| ||||| | | || || || || || ||||||||||||| |||||| Sbjct 93680 GGCTCTAGGTAGATGGCAAAGGCACCAGGACGCTTATTGCCTCCCTGATCTACATATCTA 93621 Query 80116 GCGGTGTTATTATAAACTCTCAACATTGG-AATAATACCATTGGATGTACCATTGGTC 80172 || || || || || || | | |||||| ||||| ||||||||| | ||||| ||| Sbjct 93620 GCTGTATTGTTGTACACACGAAGCATTGGTAATAA-ACCATTGGAGTTGCCATTTGTC 93564 Score = 89.7 bits (98), Expect = 7e-13 Identities = 112/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 79860 TTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGA 79919 ||| || || ||||||||||| | |||| ||||| ||||| | ||| ||||| | | Sbjct 92218 TTCAAATTCATCTCCCCAAACGTTTTCTAGGCCAGGGCATTCATGAGGGCACATGAGTGT 92159 Query 79920 CCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 79978 ||| || ||||| | | || | ||||| ||||||||||| ||||| || || ||| | Sbjct 92158 CCAGTCACCATCGGCTTCAACCCTCTTCATGAAGAGATCAGGGATCCAGAGGGC-ATAGA 92100 Query 79979 ATAGATCTCTGGTTCTATGCTCCTCGTTTCC 80009 |||| ||||| | ||| || ||||| || || Sbjct 92099 ATAGGTCTCTAGCTCTCTGTTCCTCCTTGCC 92069 >seq129531 Length=564 Score = 206 bits (228), Expect = 4e-48 Identities = 279/386 (72%), Gaps = 7/386 (2%) Strand=Plus/Minus Query 49944 ATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTC 50003 |||||| ||||||| ||| || || |||||||| |||||||||||||| || || ||||| Sbjct 384 ATGTTTGAACATCAGACAGGCAAAGTCGCAGTGAAGACCCTCGTCTCTGCTGATGAGTTC 325 Query 50004 GTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAA 50063 || || || || || || ||||| || || || || || ||||| || || | ||||| Sbjct 324 ATTTGAGAAGGTAAGCCCTGGCATCAGACCTCGTTTCTTGAGCCAGAAGATCGCAGCAAA 265 Query 50064 TGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACT 50123 || || || |||||||| || |||||||| || || ||||| | || ||| | Sbjct 264 GGAACCCGAGAAGAAGATGCCCTCTACTGCTGCGAAAGCAACGACCCTTGTGCCAAAGTC 205 Query 50124 GGCGCTGTC---ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 50180 |||||||| | ||||| | ||||| | || ||||| | || || ||||| Sbjct 204 TGCGCTGTCGCTACTGATCCAGTCCAACGCCCATTGTGCTTTCTTGGTGACGCATGGCAT 145 Query 50181 CGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGAT 50240 || || | |||||| ||||| || | | | | | |||||| | || || ||||| Sbjct 144 GGTCTCAACGGCATTGAAGAGGTAATCTCTCTGAGCTGGATCTTTGATGTATGTGTCGAT 85 Query 50241 CA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAA 50298 | || || ||||||||| || || ||||||||||| || ||||| || ||||||||| Sbjct 84 GAGTAATGA--ATACATTTCTGAGTGGATGTTTTCAATTGCAATCTGGAACCCGTAGAAA 27 Query 50299 CATCTAGCCTCGGTAATCTGCACTTC 50324 || || ||||| | |||||||||||| Sbjct 26 CACCTTGCCTCTGCAATCTGCACTTC 1 >seq289945 Length=532 Score = 163 bits (180), Expect = 4e-35 Identities = 265/381 (70%), Gaps = 3/381 (1%) Strand=Plus/Minus Query 78748 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTC 78807 || || || || ||||| ||||| || ||||| |||||| | |||| |||||||| Sbjct 381 GTGCGAAGGTAATACATACCCGTCTTCAGACCCGATCTCCATGCAAAGAAGTGCATACTG 322 Query 78808 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 78867 ||||| ||| ||| | || || || || || ||||| | |||||||| ||||| ||| Sbjct 321 GTTAGCTTGCCATAGTTTGGTTCAGCAATGTGAATATTAAGTGATTGACTCTGATCAATG 262 Query 78868 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 78927 | || || | ||| ||||||| | || | ||||| |||| || ||||||| ||| Sbjct 261 TATGCACCGCGGTCAACAGCCATCTGAATAACAGTCTTCTGTGAGATCTCCCAAACAGTC 202 Query 78928 TTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTA---TTCTGAATGGATCCACCATCT 78984 ||||| | | ||| || || ||||| | || | |||||||| |||||| | Sbjct 201 TTATACAATGCCTTGATGTCATCTGGGATTGATGGAATGTTCTGAATAGATCCAGAGTGA 142 Query 78985 GCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGG 79044 || || | | ||||||| ||||| ||| ||| | | ||||| | | ||||| Sbjct 141 GCAATGAGCATATTCTTCATCTCATCAGACCACAGACCCATGTCGGTAAGGTCCCTAAGA 82 Query 79045 AGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTG 79104 ||||| |||| || || ||||| ||||| || | || | || ||||| ||||||||| Sbjct 81 AGATGATGATTGACGACCTGAAACTCTCCTGAAAGCACACGACGCGTGTAGATATTACTG 22 Query 79105 GTATATGGTTCCACCGATTCA 79125 || || || || | |||||| Sbjct 21 GTGTACGGCTCGATGGATTCA 1 >seq140081 Length=702 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 97689 GTGATAGGTATCGATGAAGGACAGTTCTTTCCAGACATTGT-TGAA-TTCTGTGAGCGTA 97746 || ||||| ||||||||||| || || ||||| | ||||| |||| || ||||| | Sbjct 212 GTCATAGGAATCGATGAAGGCCAATTTTTTCCTG--ATTGTGTGAAGTTTTGTGAAGAAA 269 Query 97747 TGGCAAACGAAGGAAAAATAGTTATAGTAGCCGCACTTGATGGGACATTTCAACGTAAAC 97806 |||| ||| ||| ||||| | || ||||| ||| | || || ||||| || | || Sbjct 270 TGGCCAACCTAGGCAAAATCATCATTGTAGCTGCATTAGACGGAACATTCCAGAGGAAGG 329 Query 97807 CGTTTAATAATATCTTGAATCTTATTCCATTATCTGAAATGGTGGTAAAACTAACTGCTG 97866 ||| | |||| || |||||| | ||| | |||||| || | || || | |||| Sbjct 330 GTTTTGGTGATATTTTAAATCTTGTACCACTTGCTGAAAGTGTCATCAAGCTCAACGCTG 389 Query 97867 TGTGTATGAAATGCTTTAAGGAAGCTTC 97894 | |||||| | |||| ||| |||||||| Sbjct 390 TCTGTATGCATTGCTATAACGAAGCTTC 417 >seq256343 Length=109058 Score = 93.3 bits (102), Expect = 6e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 50347 TTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGT 50406 || ||||| || || || || ||||| ||||| || || | ||||| || || || Sbjct 29692 TTCTCATTGACGATACCATCGCTGGCAGCAAAGAAAGCAAGAACATGCGAGATGAAGTGC 29633 Query 50407 TTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCC 50466 | || ||| ||| || || ||||| | | ||||| || | ||| || || || Sbjct 29632 CTCTCATTGTCTGTGAGCTTGGCCCAATGTTCCAGGTCTTTGGAAAGATCGACCTCCTCG 29573 Query 50467 ACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATT 50526 | ||||| || |||||||| ||||| || || | | ||||||||| ||||||||||| Sbjct 29572 GCCGTCCAGAAGGATGCCTCGGCCTTCTTGTAGAATTGCCAGATGTCGTGATATTGGATG 29513 Query 50527 GGGAAAATAACAAA 50540 |||||||| || || Sbjct 29512 GGGAAAATGACGAA 29499 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/108 (80%), Gaps = 4/108 (4%) Strand=Plus/Minus Query 50220 ATCTTTAACATAAGTATCGATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATG 50277 |||||| | || || ||||| | || || ||||||||| || || ||||||||||| Sbjct 30504 ATCTTTGATGTATGTGTCGATGAGTAATGA--ATACATTTCTGAGTGGATGTTTTCAATT 30447 Query 50278 GCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325 || ||||| || ||||||||||| || ||||| | ||||||||||||| Sbjct 30446 GCAATCTGGAACCCGTAGAAACACCTTGCCTCTGCAATCTGCACTTCT 30399 >seq289887 Length=335 Score = 86.0 bits (94), Expect = 9e-12 Identities = 111/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 79860 TTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGA 79919 ||| || || ||||||||||| | |||| ||||| ||||| | ||| ||||| | | Sbjct 185 TTCAAATTCATCTCCCCAAACGTTTTCTAGGCCAGGGCATTCATGAGGGCACATGAGTGT 244 Query 79920 CCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 79978 ||| || ||||| | | || | ||||| ||||||||||| ||||| || || ||| | Sbjct 245 CCAGTCACCATCGGCTTCAACCCTCTTCATGAAGAGATCAGGGATCCAGAGGGC-ATAGA 303 Query 79979 ATAGATCTCTGGTTCTATGCTCCTCGTTTCC 80009 | ||||||| | ||| || ||||| || || Sbjct 304 ACAGATCTCGAGCTCTCTGTTCCTCCTTGCC 334 >seq306440 Length=70067 Score = 84.2 bits (92), Expect = 3e-11 Identities = 110/149 (74%), Gaps = 5/149 (3%) Strand=Plus/Plus Query 50035 CGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCG 50094 || || || | ||| || |||| ||||| || ||||| || || |||||||||||||| Sbjct 67538 CGTTTCTTGAACCAGAAAATGGCAGCAAACGAGCCAGAGAAAAATATTCCTTCTACTGCA 67597 Query 50095 GCAAAGGCAACAAGTCTCTCTCCATA---ACTGGCGCTGTCATG-TATCCACTTTTGAGC 50150 || || || || | ||||| ||| | ||| | || | ||| |||||||| |||| Sbjct 67598 GCGAATGCCACCAACCTCTCACCAAAGGTACTCTC-CTCTGATGCAATCCACTTGAGAGC 67656 Query 50151 CCAATCGGCCTTCTTTTTTACACAAGGCA 50179 |||||| || ||||| |||||| | |||| Sbjct 67657 CCAATCAGCTTTCTTCTTTACAAATGGCA 67685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715370639262160