Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq295142 178 1e-39 >seq295142 Length=2525 Score = 178 bits (196), Expect = 1e-39 Identities = 373/550 (68%), Gaps = 16/550 (3%) Strand=Plus/Plus Query 13639 TTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATA 13698 || ||||| || || || | ||| ||||| || || ||||| ||||| ||||| || || Sbjct 1776 TTGAGATGCTTGAACATCAGACATGCAAAGTCGCAGTGAAGACCCTCGTCTCTGCTGATG 1835 Query 13699 AGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 13758 ||||| ||||| || || | |||||||||| |||||||| || | ||| || ||||| Sbjct 1836 AGTTCATTTGAGAAGGTAAGCCCTGGCATCAGACCTCGTTTCTTGAGCCAGAAGATTGCG 1895 Query 13759 GCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCA 13818 || || || || || ||||| || ||||| ||||| || || || | | | | ||| Sbjct 1896 GCAAAGGAACCCGAGAAGAAGATGCCCTCTACTGCTGCGAAAGCAACGACCCTTGTACCA 1955 Query 13819 AACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAA 13878 || ||| | | | | ||||| | ||||||| | ||| || | | | | Sbjct 1956 AAGTCTGCGCTGTCGCTACTGATCCAGTCCAGCGCCCATTGCGCTTTCTTGGTGACACAC 2015 Query 13879 TCCATTGTTTCGATTGCATTGAATAAATGTTCCTTCTCT----TTAGTACTTGAAATGTA 13934 ||| || || | |||||||| | | || ||||| | | | |||| |||| Sbjct 2016 GGCATGGTCTCAACGGCATTGAAGAGGTAATC--TCTCTGAGCTGAATCTTTGA--TGTA 2071 Query 13935 TGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACC 13994 ||| || || ||||| ||||||||| ||||| |||||||| || || ||||| || || Sbjct 2072 TGTGTCGATGAGTAATGAATACATTTCTGAGTGGATGTTTTCAATTGCAATCTGGAACCC 2131 Query 13995 ATAAAAACATCTAGCTTCTGACCAT-TGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTT 14053 || ||||| || || |||| | || || || || | ||| ||||| ||||||| | Sbjct 2132 GTAGAAACACCTCGCCTCTG-CAATCTGCACTTCTTGGCTAAACCTTTCAACCAAGTTCT 2190 Query 14054 CATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCT 14113 |||| ||||||||||| || || || || || || | | | || ||| ||| Sbjct 2191 CATTGACAATACCATCGCTTGCAGCGAAGAAAGCAAGAACATGCGAGATGAAG---TGCC 2247 Query 14114 CTTCATTGT---TGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAA 14170 ||||||| |||| || ||||| | | || || || |||||||| || || || Sbjct 2248 TCTCATTGTCTGTGAGCTTGGCCCAATGGTCCAAGTCTTTGGAAAGATCGACCTCCTCGG 2307 Query 14171 CTGTCCAAAA 14180 | ||||| || Sbjct 2308 CCGTCCAGAA 2317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476657730086160