Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq295142 279 7e-70 seq305029 226 4e-54 seq129531 194 2e-44 seq289945 172 7e-38 seq256343 91.5 2e-13 seq289887 89.7 7e-13 >seq295142 Length=2525 Score = 279 bits (308), Expect = 7e-70 Identities = 600/893 (67%), Gaps = 13/893 (1%) Strand=Plus/Plus Query 41761 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTC 41820 |||||||||||| ||||||||||| || || || || || || ||||||||||| Sbjct 1493 CATAACTCCCATCAGCTGGTATTCACCGACCTTCTTCTCAAAGAAGTTCGTCTTTCCTTC 1552 Query 41821 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCC 41880 || || || ||||||||||| || || || || ||||| | || |||||| | | Sbjct 1553 CAGCGAGATGTTTTCCATGAAGTCGAATGGGTTCTCGACATTCCAGATCTTTTTACAGTC 1612 Query 41881 CAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATT 41940 | ||| || ||| || || || | || || || || || ||||| | | ||| Sbjct 1613 AAGCTCAACAAGCAACCTGTCGGCTACAAACTCGATGTAGGTCTTCATGAGGCCGGCATT 1672 Query 41941 CATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGC 42000 ||| || || || || ||||| | || || || || ||||| || ||||| Sbjct 1673 CATACCGATGAGAGAGCAGGGTAGAGCGTCCGTCAGGAACTCCTGTTCGATCTTAACCGC 1732 Query 42001 GTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAAT---AAATGTTTAAA 42057 || | || || || |||| || ||| | | ||| || || Sbjct 1733 TTCCCTGATGATCCCCTGGACATGAGCTTC---CGATGGCTTGTTGTTGAGATGCTTGAA 1789 Query 42058 CATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAA 42117 ||||| |||||| || |||||||| |||||||| ||||| || || | ||| || || || Sbjct 1790 CATCAGACATGCAAAGTCGCAGTGAAGACCCTCGTCTCTGCTGATGAGTTCATTTGAGAA 1849 Query 42118 CGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGA 42177 || || || ||||| || || || || || ||||| || || | ||||| || || || Sbjct 1850 GGTAAGCCCTGGCATCAGACCTCGTTTCTTGAGCCAGAAGATTGCGGCAAAGGAACCCGA 1909 Query 42178 AAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTC 42237 |||||||| || |||||||| || || |||| | || ||| | | || ||||| Sbjct 1910 GAAGAAGATGCCCTCTACTGCTGCGAAAGCAACGACCCTTGTACCAAAGTCTGCGCTGTC 1969 Query 42238 ---ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 42294 | ||||| | | ||||| | || ||||| | ||||| ||||| || || | Sbjct 1970 GCTACTGATCCAGTCCAGCGCCCATTGCGCTTTCTTGGTGACACACGGCATGGTCTCAAC 2029 Query 42295 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCA--AAAGA 42352 |||||| ||||| || | | | | | |||||| | ||||| ||||| | || || Sbjct 2030 GGCATTGAAGAGGTAATCTCTCTGAGCTGAATCTTTGATGTATGTGTCGATGAGTAATGA 2089 Query 42353 CTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCC 42412 |||||||||||| || ||||||||||| || ||||| || ||||||||||| || ||| Sbjct 2090 --ATACATTTCTGAGTGGATGTTTTCAATTGCAATCTGGAACCCGTAGAAACACCTCGCC 2147 Query 42413 TCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCA 42472 || | || ||| |||||| | ||| | |||| | || || || || || || || || Sbjct 2148 TCTGCAATCTGCACTTCTTGGCTAAACCTTTCAACCAAGTTCTCATTGACAATACCATCG 2207 Query 42473 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTA 42532 || || || || || || | ||||| || || | | || | ||| | || Sbjct 2208 CTTGCAGCGAAGAAAGCAAGAACATGCGAGATGAAGTGCCTCTCATTGTCTGTGAGCTTG 2267 Query 42533 TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCT 42592 ||||| | | ||||| || | ||| || || || ||||||| || ||||| || Sbjct 2268 GCCCAATGGTCCAAGTCTTTGGAAAGATCGACCTCCTCGGCCGTCCAGAAGGATGCCTCC 2327 Query 42593 GCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAA 42645 ||||| || || | | |||||| ||||||||||| || ||||| || ||||| Sbjct 2328 GCCTTCTTGTAGAATTGCCAGATGTCATGATATTGGATGGGGAAGATGACAAA 2380 >seq305029 Length=127772 Score = 226 bits (250), Expect = 4e-54 Identities = 379/537 (71%), Gaps = 12/537 (2%) Strand=Plus/Minus Query 71725 ACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTT 71784 ||||||| || | | ||| | || || || || || || ||||| || ||||||||| Sbjct 94094 ACCTCATCAGGACTTGAATACTCTACGATCTCTGTACACAGGTTACTGCATTTGATGGTT 94035 Query 71785 CCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTA 71844 || || |||||||| |||||||| ||||||| ||||| || || ||| | || ||| Sbjct 94034 CCCAAGTTTTGTTGGTTACTCTTCCTGTTACAATGGTCCTTGTACAGCATATATGGGGTA 93975 Query 71845 CCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTC 71904 ||||| || | |||||||| || || || | ||| | | | ||||| ||| | ||| Sbjct 93974 CCAGTCTCTGTTTGAGATTCAATGATGGCATACCACAGAGCCTGGGCCTTCATTGTCTTC 93915 Query 71905 TTGTATCTCTT--TTCTCTTTCGTA-TTGT-GTATATAATCGTTCGAACTCGTCTCCCCA 71960 | | | || |||| | || || || | ||| | | ||| || || |||||||| Sbjct 93914 CT--ACCCTTTCCTTCTTTCTCATACTTCTCGTAGAGCTT--TTCAAATTCATCTCCCCA 93859 Query 71961 AGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATT 72020 | | || |||| ||||| ||||||| || ||||| | | ||| || |||||| | | Sbjct 93858 AACGTTTTCTAGGCCAGGGCATTCATGAGGGCACATGAGGGTCCAGTCACCATCAGCTTC 93799 Query 72021 TACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTAT 72079 || | ||||||||||||||||| ||||| || || ||| || ||||||| || ||| | Sbjct 93798 AACCCTCTTCATAAAGAGATCAGGGATCCAGAGGGC-ATAGAACAGATCTCGGGCTCTCT 93740 Query 72080 GCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACG 72139 | ||||| || || ||||| ||| || | ||| | ||||||| |||||| | Sbjct 93739 GTTCCTCCTTGCCGTGGTTCTTCTTACAGTCTAAGAAATCATGGATATCAGCATGCCATG 93680 Query 72140 GTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAG 72199 | || | ||| ||||| | | || || || || || ||||||||||||| ||||||| Sbjct 93679 GCTCTAGGTAGATGGCAAAGGCACCAGGACGCTTATTGCCTCCCTGATCTACATATCTAG 93620 Query 72200 CGGTGTTATTATAAACTCTCAACATTGG-AATAATACCATTGGATGCACCATTGGTC 72255 | || || || || || | | |||||| ||||| ||||||||| ||||| ||| Sbjct 93619 CTGTATTGTTGTACACACGAAGCATTGGTAATAA-ACCATTGGAGTTGCCATTTGTC 93564 Score = 100 bits (110), Expect = 4e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 70867 CTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATA 70926 |||||| | | || |||||||| ||||| ||| |||| | || || || ||||||||| Sbjct 99877 CTCCATGCAAAGAAGTGCATACTGGTTAGCTTGCCATAGTTTGGTTCAGCAATGTGAATA 99818 Query 70927 TTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTC 70986 || | || ||||| ||||| ||| | || || | ||| ||||||| | || | ||| Sbjct 99817 TTAAGTGATTGACTCTGATCAATGTATGCACCGCGGTCAACAGCCATCTGAATAACAGTC 99758 Query 70987 TTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 71036 || |||| || ||||||| ||| ||||| | | ||| || || ||||| Sbjct 99757 TTCTGTGAGATCTCCCAAACAGTCTTATACAATGCCTTGATGTCATCTGG 99708 Score = 95.1 bits (104), Expect = 2e-14 Identities = 113/151 (75%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 71943 TTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGA 72002 ||| || || ||||||||| | || |||| ||||| ||||||| || ||||| | || Sbjct 92218 TTCAAATTCATCTCCCCAAACGTTTTCTAGGCCAGGGCATTCATGAGGGCACATGAGTGT 92159 Query 72003 CCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 72061 ||| || ||||| | | || | ||||| ||||||||||| ||||| || || ||| | Sbjct 92158 CCAGTCACCATCGGCTTCAACCCTCTTCATGAAGAGATCAGGGATCCAGAGGGC-ATAGA 92100 Query 72062 ATAGATCTCTGGTTCTATGCTCCTCGTTTCC 72092 |||| ||||| | ||| || ||||| || || Sbjct 92099 ATAGGTCTCTAGCTCTCTGTTCCTCCTTGCC 92069 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 71725 ACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTT 71784 ||||||| || | | ||| | || || || || || || ||||| || ||||||||| Sbjct 95789 ACCTCATCAGGACTTGAATACTCTACGATCTCTGTACACAGGTTACTGCATTTGATGGTT 95730 Query 71785 CCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTA 71844 || || |||||||| |||||||| ||||||| ||||| || || ||| | || ||| Sbjct 95729 CCCAAGTTTTGTTGGTTACTCTTCCTGTTACAATGGTCCTTGTAGAGCATATATGGGGTA 95670 Query 71845 CCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 71879 ||||| || | |||||||| || || || | ||| Sbjct 95669 CCAGTCTCTGTTTGAGATTCAATGATGGCATACCA 95635 >seq129531 Length=564 Score = 194 bits (214), Expect = 2e-44 Identities = 276/386 (72%), Gaps = 7/386 (2%) Strand=Plus/Minus Query 42049 ATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTC 42108 |||||| ||||||| ||| || || |||||||| |||||||| ||||| || || | ||| Sbjct 384 ATGTTTGAACATCAGACAGGCAAAGTCGCAGTGAAGACCCTCGTCTCTGCTGATGAGTTC 325 Query 42109 GTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAA 42168 || || || || || || ||||| || || || || || ||||| || || | ||||| Sbjct 324 ATTTGAGAAGGTAAGCCCTGGCATCAGACCTCGTTTCTTGAGCCAGAAGATCGCAGCAAA 265 Query 42169 TGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACC 42228 || || || |||||||| || |||||||| || || |||| | || ||| | | Sbjct 264 GGAACCCGAGAAGAAGATGCCCTCTACTGCTGCGAAAGCAACGACCCTTGTGCCAAAGTC 205 Query 42229 GGCACTGTC---ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 42285 || ||||| | ||||| | ||||| | || ||||| | || || ||||| Sbjct 204 TGCGCTGTCGCTACTGATCCAGTCCAACGCCCATTGTGCTTTCTTGGTGACGCATGGCAT 145 Query 42286 CGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGAT 42345 || || | |||||| ||||| || | | | | | |||||| | ||||| ||||| Sbjct 144 GGTCTCAACGGCATTGAAGAGGTAATCTCTCTGAGCTGGATCTTTGATGTATGTGTCGAT 85 Query 42346 CA--AAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAA 42403 | || || |||||||||||| || ||||||||||| || ||||| || ||||||||| Sbjct 84 GAGTAATGA--ATACATTTCTGAGTGGATGTTTTCAATTGCAATCTGGAACCCGTAGAAA 27 Query 42404 CATCTGGCCTCGGTAACCTGTACTTC 42429 || || ||||| | || ||| ||||| Sbjct 26 CACCTTGCCTCTGCAATCTGCACTTC 1 >seq289945 Length=532 Score = 172 bits (190), Expect = 7e-38 Identities = 261/371 (70%), Gaps = 3/371 (1%) Strand=Plus/Minus Query 70831 GTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 70890 || || || || ||||| || || || ||||| |||||| | | || |||||||| Sbjct 381 GTGCGAAGGTAATACATACCCGTCTTCAGACCCGATCTCCATGCAAAGAAGTGCATACTG 322 Query 70891 GTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATG 70950 ||||| ||| |||| | || || || ||||||||||| | || ||||| ||||| ||| Sbjct 321 GTTAGCTTGCCATAGTTTGGTTCAGCAATGTGAATATTAAGTGATTGACTCTGATCAATG 262 Query 70951 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 71010 | || || | ||| ||||||| | || | ||||| |||| || ||||||| ||| Sbjct 261 TATGCACCGCGGTCAACAGCCATCTGAATAACAGTCTTCTGTGAGATCTCCCAAACAGTC 202 Query 71011 TTATAAACTCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCT 71067 ||||| | | ||| || || ||||| | || | |||||||| |||||| | Sbjct 201 TTATACAATGCCTTGATGTCATCTGGGATTGATGGAATGTTCTGAATAGATCCAGAGTGA 142 Query 71068 GCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGG 71127 ||||| | | |||| || ||||| ||| ||| | | ||||| | | ||||| Sbjct 141 GCAATGAGCATATTCTTCATCTCATCAGACCACAGACCCATGTCGGTAAGGTCCCTAAGA 82 Query 71128 AGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTG 71187 |||||| |||| || || ||||| ||||| || | || | ||| ||||| ||||||||| Sbjct 81 AGATGATGATTGACGACCTGAAACTCTCCTGAAAGCACACGACGCGTGTAGATATTACTG 22 Query 71188 GTATACGGTTC 71198 || ||||| || Sbjct 21 GTGTACGGCTC 11 >seq256343 Length=109058 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/108 (80%), Gaps = 4/108 (4%) Strand=Plus/Minus Query 42325 ATCTTTAACATATGTATCGATCA--AAAGACTATACATTTCTGAATGAATGTTTTCAATG 42382 |||||| | ||||| ||||| | || || |||||||||||| || ||||||||||| Sbjct 30504 ATCTTTGATGTATGTGTCGATGAGTAATGA--ATACATTTCTGAGTGGATGTTTTCAATT 30447 Query 42383 GCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430 || ||||| || ||||||||||| || ||||| | || ||| |||||| Sbjct 30446 GCAATCTGGAACCCGTAGAAACACCTTGCCTCTGCAATCTGCACTTCT 30399 >seq289887 Length=335 Score = 89.7 bits (98), Expect = 7e-13 Identities = 112/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 71943 TTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGA 72002 ||| || || ||||||||| | || |||| ||||| ||||||| || ||||| | || Sbjct 185 TTCAAATTCATCTCCCCAAACGTTTTCTAGGCCAGGGCATTCATGAGGGCACATGAGTGT 244 Query 72003 CCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 72061 ||| || ||||| | | || | ||||| ||||||||||| ||||| || || ||| | Sbjct 245 CCAGTCACCATCGGCTTCAACCCTCTTCATGAAGAGATCAGGGATCCAGAGGGC-ATAGA 303 Query 72062 ATAGATCTCTGGTTCTATGCTCCTCGTTTCC 72092 | ||||||| | ||| || ||||| || || Sbjct 304 ACAGATCTCGAGCTCTCTGTTCCTCCTTGCC 334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 668431203663440