Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq305346 105 7e-18 seq233793 102 8e-17 seq15040 102 8e-17 seq172955 98.7 1e-15 seq33451 96.9 3e-15 seq301046 95.1 1e-14 seq229213 95.1 1e-14 seq171612 95.1 1e-14 seq73885 86.0 6e-12 seq124407 84.2 2e-11 >seq305346 Length=360 Score = 105 bits (116), Expect = 7e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||| | ||| | || || || ||||| |||||||| || | |||| |||||| Sbjct 109 AACAAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCTGATAGAGTGCGGCCGTCTTC 168 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 |||||| || |||||| |||| ||||| |||||||| || || |||||||| ||||| Sbjct 169 GAGTTGCTTGCCAGCAAAGATGAGACGCTGCTGATCAGGGGGGATGCCTTCCTTGTCCTG 228 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 ||| ||| |||| | || | ||||| | || || || |||| ||| | ||||| Sbjct 229 AATCTTTGCCTTTACATTCTCGATGGTGTCACTTGGCTCAACCTCAAGAGTGATGGTCTT 288 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||| || | || || ||||| || |||||| Sbjct 289 GCCTGTGAGGGTCTTGACGAAGATCTGCATA 319 >seq233793 Length=42987 Score = 102 bits (112), Expect = 8e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||| | ||| | || || || ||||| |||||||| || | |||| ||| || Sbjct 12808 AACGAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCTGATAGAGTGCGGCCGTCCTC 12867 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 |||||| || ||||| |||| ||||| ||||||||||| || |||||||| ||||| Sbjct 12868 GAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTG 12927 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 ||| ||| |||| | || | ||||| | || || || |||| ||| | ||||| Sbjct 12928 AATCTTTGCCTTTACATTCTCGATGGTGTCACTTGGCTCAACCTCAAGAGTGATGGTCTT 12987 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 ||| || | || || ||||| || |||||| || Sbjct 12988 GCCTGTGAGGGTCTTGACGAAGATCTGCATACCT 13021 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||| | ||| | || || || || || |||||||| || | |||| ||| || Sbjct 13263 AACGAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCGTCCTC 13322 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 |||||| || ||||| |||| ||||| ||||||||||| || |||||||| ||||| Sbjct 13323 GAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTG 13382 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 ||| || |||| | || | ||||| | || || || |||| ||| | ||||| Sbjct 13383 AATCTTAGCCTTTACGTTCTCAATGGTGTCACTTGGCTCAACCTCAAGAGTGATGGTCTT 13442 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 ||| || | || || ||||| || |||||| || Sbjct 13443 GCCTGTGAGGGTCTTGACGAAGATCTGCATACCT 13476 >seq15040 Length=705 Score = 102 bits (112), Expect = 8e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||| | ||| | |||||||| || || |||||||| || | |||| ||| || Sbjct 531 AACGAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCGTCCTC 472 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 |||||| || ||||| |||| ||||| ||||||||||| || |||||||| ||||| Sbjct 471 GAGTTGCTTTCCAGCGAAGATTAGACGCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTG 412 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 ||| ||| |||| | || | ||||| | || || || || | ||| | ||||| Sbjct 411 AATCTTTGCCTTTACATTCTCGATGGTGTCACTTGGCTCAACCTCGAGAGTGATGGTCTT 352 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 ||| || | || || ||||| || |||||| || Sbjct 351 GCCTGTGAGGGTCTTGACGAAGATCTGCATACCT 318 Score = 95.1 bits (104), Expect = 1e-14 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 143029 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 143088 ||| |||||||| || ||||| |||| ||||| |||||||| || || ||||||||||| Sbjct 705 GTCCTCGAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATGCCTTCTTT 646 Query 143089 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCAC 143148 ||| ||| ||| ||| | | || | ||||| | || || || |||| ||| | Sbjct 645 GTCCTGAATCTTTGCTTTGACATTCTCGATGGTGTCACTTGGCTCAACCTCAAGAGTGAT 586 Query 143149 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 |||||||| || | || || ||||| || |||||| || Sbjct 585 GGTCTTGCCAGTAAGGGTCTTGACGAAGATCTGCATACCT 546 >seq172955 Length=397 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||| | ||| | || || || ||||| |||||||| || | |||| || || Sbjct 304 AACAAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCTGATAGAGTGCGGCCATCCTC 245 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 |||||| || ||||| |||| ||||| ||||||||||| || |||||||| ||||| Sbjct 244 GAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTG 185 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 ||| ||| |||| | || | ||||| | || || || |||| ||| | ||||| Sbjct 184 AATCTTTGCCTTTACATTCTCGATGGTGTCGCTTGGCTCAACCTCAAGAGTGATGGTCTT 125 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 ||| || | || || ||||| || |||||| || Sbjct 124 GCCAGTGAGGGTCTTGACGAAGATCTGCATACCT 91 >seq33451 Length=524 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/216 (70%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGA--GTCT 143032 ||| | ||| | || || || || || |||||||| || | || | | ||| ||| Sbjct 349 AACGAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTC--TGATAGAGTGCGACCGTCC 292 Query 143033 TCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG 143092 |||||||| || ||||| |||| ||||| ||||||||||| || |||||||| ||||| Sbjct 291 TCGAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGGGGAATGCCTTCCTTGTCC 232 Query 143093 GTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTC 143152 |||| || ||| | || | ||||| | || || || |||| ||| | ||| Sbjct 231 TGAATTCTTGTCCTTACATTCTCGATGGTGTCACTTGGCTCAACCTCAAGAGTGATGGTC 172 Query 143153 TTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 ||||| || | || || ||||| || |||||| || Sbjct 171 TTGCCAGTAAGGGTCTTGACGAAGATCTGCATACCT 136 Score = 82.4 bits (90), Expect = 8e-11 Identities = 117/161 (73%), Gaps = 3/161 (2%) Strand=Plus/Minus Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATG-CCTTCTTT 143088 || || ||||| || ||||| |||| ||||| |||||||| || || ||| |||||||| Sbjct 523 TCCTCAAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGG-GGAATGTCCTTCTTT 465 Query 143089 GT-CGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCA 143147 || | ||||| ||| ||| | | || | ||||| | || || || |||| ||| | Sbjct 464 GTCCTGTAATCTTTGCTTTGACATTCTCGATGGTGTCACTTGGCTCAACCTCAAGAGTGA 405 Query 143148 CCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 |||||||| || | || || ||||| || |||||| || Sbjct 404 TGGTCTTGCCAGTAAGGGTCTTGACGAAGATCTGCATACCT 364 >seq301046 Length=281 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/199 (71%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 |||||||| || || |||||||| || | |||| ||| |||||||| || ||| Sbjct 223 GTAGATTCCTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCGTCCTCGAGTTGCTTGCCA 164 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTA-TGCCTTCTTTGTCGGTAATTTTTTGTTT 143106 || |||| ||||| ||||||||||| || | ||||||| ||||| ||| || || Sbjct 163 GCGAAGATGAGACGCTGCTGATCGGGGGGAAGTGCCTTCCTTGTCCTGAATCTTAGCCTT 104 Query 143107 TAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 143166 || | || | ||||| | || || || |||| ||| | |||||||| || | || Sbjct 103 TACGTTCTCAATGGTGTCACTTGGCTCAACCTCAAGAGTGATGGTCTTGCCAGTAAGGGT 44 Query 143167 TTTTACGAATATTTGCATA 143185 || ||||| || |||||| Sbjct 43 CTTGACGAAGATCTGCATA 25 >seq229213 Length=300 Score = 95.1 bits (104), Expect = 1e-14 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 143029 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 143088 ||| |||||||| || ||||| |||| ||||| ||||||||||| || |||||||| || Sbjct 3 GTCCTCGAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGGGGAATGCCTTCCTT 62 Query 143089 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCAC 143148 ||| ||| ||| |||| | || | ||||| | || || || |||| ||| | Sbjct 63 GTCCTGAATCTTTGCCTTTACATTCTCGATGGTGTCACTTGGCTCAACCTCAAGAGTGAT 122 Query 143149 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 |||||||| || | || || ||||| || |||||| || Sbjct 123 GGTCTTGCCAGTAAGGGTCTTGACGAAGATCTGCATACCT 162 >seq171612 Length=420 Score = 95.1 bits (104), Expect = 1e-14 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 143029 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 143088 ||| |||||||| || ||||| |||| ||||| |||||||| || || ||||||||||| Sbjct 414 GTCCTCGAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATGCCTTCTTT 355 Query 143089 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCAC 143148 ||| ||| ||| ||| | | || | ||||| | || || || |||| ||| | Sbjct 354 GTCCTGAATCTTTGCTTTGACATTCTCGATGGTGTCGCTTGGCTCAACCTCAAGAGTGAT 295 Query 143149 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 |||||||| || | || || ||||| || |||||| || Sbjct 294 GGTCTTGCCTGTGAGGGTCTTGACGAAGATCTGCATACCT 255 >seq73885 Length=163 Score = 86.0 bits (94), Expect = 6e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 143029 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 143088 ||| |||||||| || ||||| |||| ||||| ||||||||||| || |||||||| || Sbjct 32 GTCCTCGAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGGGGAATGCCTTCCTT 91 Query 143089 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCAC 143148 ||| ||| ||| |||| | ||| | ||||| | || || || |||| ||| | Sbjct 92 GTCCTGAATCTTTGCCTTTACGTTTTCTATGGTGTCACTTGGCTCAACCTCAAGAGTGAT 151 Query 143149 CGTCTTGCCGGT 143160 |||||||| || Sbjct 152 GGTCTTGCCTGT 163 >seq124407 Length=407 Score = 84.2 bits (92), Expect = 2e-11 Identities = 131/186 (70%), Gaps = 1/186 (1%) Strand=Plus/Minus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||| | ||| | || || || ||||| |||||||| || | |||| ||| || Sbjct 187 AACGAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCTGATAGAGTGCGGCCGTCCTC 128 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 |||||| || ||||| |||| ||||| ||||||||||| || |||||||| ||||| Sbjct 127 GAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGG-GGAATGCCTTCCTTGTCCTG 69 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 ||| ||| |||| | || | ||||| | || || || |||| ||| | ||||| Sbjct 68 AATCTTTGCCTTTACATTCTCGATGGTGTCACTTGGCTCAACCTCAAGAGTAATGGTCTT 9 Query 143155 GCCGGT 143160 ||| || Sbjct 8 GCCAGT 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504968634922080