Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq295142 199 6e-46 seq256343 114 2e-20 seq315500 107 3e-18 seq129531 105 1e-17 seq205252 95.1 2e-14 >seq295142 Length=2525 Score = 199 bits (220), Expect = 6e-46 Identities = 398/583 (68%), Gaps = 19/583 (3%) Strand=Plus/Minus Query 124998 TTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 || |||||| ||||||||||| ||| || | ||||| ||||| |||| ||||| ||| Sbjct 2371 TTCCCCATCCAATATCATGACATCTGGCAATTCTACAAGAAGGCGGAGGCATCCTTCTGG 2312 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117 |||| ||| ||||||||||| ||||| ||| || || |||||| | | | || || Sbjct 2311 ACGGCCGAGGAGGTCGATCTTTCCAAAGACTTGGACCATTGGGCCAAGC---TCACAGAC 2255 Query 125118 ACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTC 125177 | |||| | | || || ||||| || | || ||||| || | |||||| || ||| Sbjct 2254 AATGAGAGGCACTTCATCTCGCATGTTCTTGCTTTCTTCGCTGCAAGCGATGGTATTGTC 2195 Query 125178 AACGACAA-TCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTT 125236 || || || | ||||| | | || | ||||| || ||| |||||| | ||| || Sbjct 2194 AATGAGAACTTGGTTGAAAGGTTTAGC-CAAGAAGTGCAGATTGCAGAGGCGAGGTGTTT 2136 Query 125237 TTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGA 125296 ||||| ||||| || ||||| ||| | ||||| |||||||| || ||| || || Sbjct 2135 CTACGGGTTCCAGATTGCAATTGAAAACATCCACTCAGAAATGTATTCATTACTCATCGA 2076 Query 125297 CATGTACATTCGCGATCCGCAACGTAAACACAT--GCTCTTTAACGCAATCGACACGGTG 125354 || ||||| ||| || | | | | || ||||| || || | || || || Sbjct 2075 CACATACATCAAAGAT--TCAGCTCAGAGAGATTACCTCTTCAATGCCGTTGAGACCATG 2018 Query 125355 CCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACA----AGTC 125410 |||| | | || || || ||||||| | | |||||| | ||||| || | Sbjct 2017 CCGTGTGTCACCAAGAAAGCGCAATGGGCGCTGGACTGGATCAGTAGCGACAGCGCAGAC 1958 Query 125411 -TTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTA 125469 || |||| || | || || ||||| || ||||||||||||||||| |||||| Sbjct 1957 TTTGGTAC-----AAGGGTCGTTGCTTTCGCAGCAGTAGAGGGCATCTTCTTCTCGGGTT 1903 Query 125470 GTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTA 125529 ||||| || ||||| ||||||||||| || || || ||||| || || || | | Sbjct 1902 CCTTTGCCGCAATCTTCTGGCTCAAGAAACGAGGTCTGATGCCAGGGCTTACCTTCTCAA 1843 Query 125530 ACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 | || | || |||||||||| || ||||| |||||||| Sbjct 1842 ATGAACTCATCAGCAGAGACGAGGGTCTTCACTGCGACTTTGC 1800 >seq256343 Length=109058 Score = 114 bits (126), Expect = 2e-20 Identities = 141/192 (73%), Gaps = 3/192 (2%) Strand=Plus/Plus Query 124998 TTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 || |||||| ||||| ||||| ||| || | ||||| ||||| |||| ||||| ||| Sbjct 29508 TTCCCCATCCAATATCACGACATCTGGCAATTCTACAAGAAGGCCGAGGCATCCTTCTGG 29567 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117 |||| ||| ||||||||||| ||||| |||||| | |||||| | | | || || Sbjct 29568 ACGGCCGAGGAGGTCGATCTTTCCAAAGACCTGGAACATTGGGCCAAGC---TCACAGAC 29624 Query 125118 ACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTC 125177 | |||| | | || || ||||| || | || |||||||| | | |||||| |||||| Sbjct 29625 AATGAGAGGCACTTCATCTCGCATGTTCTTGCTTTCTTTGCTGCCAGCGATGGTATCGTC 29684 Query 125178 AACGACAATCTG 125189 || || || ||| Sbjct 29685 AATGAGAACCTG 29696 Score = 86.0 bits (94), Expect = 9e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGG 125489 || || ||||| || ||||||||||||||||| |||||| ||||| || ||||| ||| Sbjct 31317 GTTGCTTTCGCAGCAGTAGAGGGCATCTTCTTCTCGGGTTCCTTTGCTGCGATCTTCTGG 31376 Query 125490 CTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 |||||||| || || || ||||| || || || Sbjct 31377 CTCAAGAAACGAGGTCTGATGCCAGGGCTTAC 31408 >seq315500 Length=25896 Score = 107 bits (118), Expect = 3e-18 Identities = 157/223 (70%), Gaps = 12/223 (5%) Strand=Plus/Plus Query 127364 CATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTACGGCATGCTTTCGAAAAAGAGTG 127423 ||||||| | ||||||||||| | | |||| ||||||||||| ||| || || | | Sbjct 16780 CATAGTCAATGAGTCCAGTCTCCTGGTTCACCCTGTACGGCATGGATTCAAAGAACACCG 16839 Query 127424 ATGTAGCGGACACGTT--------GCG----GAATCCGTGCGTCAGGTGGCCTCCGTCGG 127471 | || || || | || ||| ||||||||| || || ||||| ||||| | Sbjct 16840 AAGTGGCAGAAATCTTCTTCTTGGGCGTCATGAATCCGTGGGTAAGATGGCCGCCGTCCG 16899 Query 127472 GCAGATCGAGTCCCATGATTCTACCGTGCGGTTTAACGATTCCAGTGTACACGGCAAAGT 127531 | ||||| || |||||||| | ||||| || | || ||| ||||| |||||||||| Sbjct 16900 GAAGATCAAGACCCATGATGCGCCCGTGAGGACCGATGACTCCGGTGTAGACGGCAAAGT 16959 Query 127532 TGGCCATCGAGCCCGAGTACGGTTGTACACACACTCCCCATTC 127574 | || ||||| ||||| || || ||| || |||||||| Sbjct 16960 TTGCTGGAGAGCCAGAGTAGGGCTGGACATTGACCCCCCATTC 17002 >seq129531 Length=564 Score = 105 bits (116), Expect = 1e-17 Identities = 253/378 (67%), Gaps = 20/378 (5%) Strand=Plus/Plus Query 125217 ATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAA 125276 ||| |||||| ||| || ||||| ||||| || ||||| ||| | ||||| ||| Sbjct 10 ATTGCAGAGGCAAGGTGTTTCTACGGGTTCCAGATTGCAATTGAAAACATCCACTCAGAA 69 Query 125277 ATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAACACATG--CTCT 125334 ||||| || ||| || |||| ||||| ||||| | | | | | || |||| Sbjct 70 ATGTATTCATTACTCATCGACACATACATCAAAGATCC--AGCTCAGAGAGATTACCTCT 127 Query 125335 TTAACGCAATCGACACGGTGCCGTCTATACGT----AAAAAGGCTCAATGGGTGATTCGG 125390 | || || | || || |||| || ||| || || || ||||||| | | Sbjct 128 TCAATGCCGTTGAGACCATGCC----ATGCGTCACCAAGAAAGCACAATGGGCGTTGGAC 183 Query 125391 TGGATCGATGACGACA----AGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGT 125446 |||||| | ||||| || ||| | || | || | || || ||||| || || Sbjct 184 TGGATCAGTAGCGACAGCGCAGACTTTG---GCACA-AGGGTCGTTGCTTTCGCAGCAGT 239 Query 125447 AGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACT 125506 ||||||||||||||| |||||| ||||| || ||||| ||||||||||| || || || Sbjct 240 AGAGGGCATCTTCTTCTCGGGTTCCTTTGCTGCGATCTTCTGGCTCAAGAAACGAGGTCT 299 Query 125507 CATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGA 125566 ||||| || || || | || || | || |||||||||| || ||||| || Sbjct 300 GATGCCAGGGCTTACCTTCTCAAATGAACTCATCAGCAGAGACGAGGGTCTTCACTGCGA 359 Query 125567 CTTTGCCATTCTACTGTT 125584 ||||||| ||| |||| Sbjct 360 CTTTGCCTGTCTGATGTT 377 >seq205252 Length=316 Score = 95.1 bits (104), Expect = 2e-14 Identities = 118/161 (73%), Gaps = 3/161 (2%) Strand=Plus/Plus Query 124998 TTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 || |||||| ||||| ||||| ||| || | ||||| ||||| |||| ||||| ||| Sbjct 155 TTCCCCATCCAATATCACGACATCTGGCAATTCTACAAGAAGGCCGAGGCGTCCTTCTGG 214 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117 |||| ||| ||||||||||| ||||| |||||| | |||||| | | | || || Sbjct 215 ACGGCCGAGGAGGTCGATCTTTCCAAAGACCTGGAACATTGGGCCAAGC---TCACAGAC 271 Query 125118 ACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGC 125158 | |||| | | || || ||||| || | || |||||||| Sbjct 272 AATGAGAGGCACTTCATCTCGCATGTTCTTGCTTTCTTTGC 312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 738069081707440