Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_004813.1 Length=57930 Score E Sequences producing significant alignments: (Bits) Value seq104363 91.5 5e-14 >seq104363 Length=468 Score = 91.5 bits (100), Expect = 5e-14 Identities = 140/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 53018 GACCGCGTAAACCGTCAGTTCGTGGCAGAACGACCTGACCAGCTGTGGGTGGCTGATTTT 53077 ||||| || ||||| |||||| || || || || ||||||||||||| | || || Sbjct 316 GACCGGGTCAACCGGCAGTTCCGTGCCGAGCGGCCCAACCAGCTGTGGGTCTCGGACTTC 257 Query 53078 ACTTACGTCAGCACATGGCAGGGCTTCGTCTATGTGGCGTTCATCATTGATGTGTT-TGC 53136 || |||||| || |||||||||| ||||||||||| ||| | | || ||||| || Sbjct 256 ACGTACGTCTCGACCTGGCAGGGCTGGGTCTATGTGGCATTCGTGGTGGACGTGTTCAGC 197 Query 53137 CGGATACATTGTGGGGTGGCGGGTCTCATC--GTCCATGGAGACGACATTCGTGCTGGAT 53194 ||| ||| ||||| |||| | | | | || ||| | || |||||||| || Sbjct 196 CGG-CGCATCGTGGGCTGGC--GCCAGAGCAGTTCGATGCACACCGAGTTCGTGCTCGAC 140 Query 53195 GCACTGGAGCAGGCG 53209 || |||||||||||| Sbjct 139 GCGCTGGAGCAGGCG 125 Score = 86.0 bits (94), Expect = 2e-12 Identities = 141/199 (71%), Gaps = 6/199 (3%) Strand=Plus/Minus Query 50178 GACCGCGTAAACCGTCAGTTCGTGGCAGAACGTCCAGACCAGTTGTGGGTGGCTGATTTT 50237 ||||| || ||||| |||||| || || || || ||||| ||||||| | || || Sbjct 316 GACCGGGTCAACCGGCAGTTCCGTGCCGAGCGGCCCAACCAGCTGTGGGTCTCGGACTTC 257 Query 50238 ACCTGGGTAAGCACATGGCAGGGCTTCGTTTATGTGGCGTTCATCATTGATGTGTTC-GC 50296 || | || || |||||||||| || |||||||| ||| | | || |||||| || Sbjct 256 ACGTACGTCTCGACCTGGCAGGGCTGGGTCTATGTGGCATTCGTGGTGGACGTGTTCAGC 197 Query 50297 CGGATACATCGTGGGATGGCAGGTCTCATCA--TCCATGGAAACAACATTCGTGCTGGAT 50354 ||| ||||||||| |||| | | | || || ||| | || |||||||| || Sbjct 196 CGGCG-CATCGTGGGCTGGC--GCCAGAGCAGTTCGATGCACACCGAGTTCGTGCTCGAC 140 Query 50355 GCACTGGAGCAGGCGTTGT 50373 || |||||||||||| ||| Sbjct 139 GCGCTGGAGCAGGCGCTGT 121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 184544286770576