Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq295142 187 2e-42 seq306440 86.0 5e-12 >seq295142 Length=2525 Score = 187 bits (206), Expect = 2e-42 Identities = 553/838 (66%), Gaps = 16/838 (2%) Strand=Plus/Plus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 || ||||| | || | || ||||| ||||| || |||||||| | ||| || |||||| Sbjct 1509 TGGTATTCACCGACCTTCTTCTCAAAGAAGTTCGTCTTTCCTTCCAGCGAGATGTTTTCC 1568 Query 12923 ATAAAATCGAAAGGATTTTTCGAACAAT--AGTATTTTTTACACCCTAATTCTAGTAACA 12980 || || ||||| || || | ||| || | || |||||||| | | || | | || Sbjct 1569 ATGAAGTCGAATGGGTTCT-CGA-CATTCCAGATCTTTTTACAGTCAAGCTCAACAAGCA 1626 Query 12981 ATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATT 13040 | ||||| || |||||||| ||||| ||||| | | ||||| || || | Sbjct 1627 ACCTGTCGGCTACAAACTCGATGTAGGTCTTCATGAGGCCGGCATTCATACCGATGAGAG 1686 Query 13041 TTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGT 13100 || | ||| || || | || | | ||| || | ||| ||||| | | || Sbjct 1687 AGCAGGGTAGAGCGTCCGTCAGGAACTCCTGTTCGATCTTAACCGCTTCCCTGATGATCC 1746 Query 13101 CTCTTATTACGTTCT-CTAATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAAA 13159 | || | | || | |||| || |||||||| ||||||| ||||||||| Sbjct 1747 C-CTGGACATGAGCTTCCGATGGCTTGTTGTTGAGATGCTTGAACATCAGACATGCAAAG 1805 Query 13160 TCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATA 13219 || ||||| | || || ||||| || || || || ||||| || || || || ||||| Sbjct 1806 TCGCAGTGAAGACCCTCGTCTCTGCTGATGAGTTCATTTGAGAAGGTAAGCCCTGGCATC 1865 Query 13220 AGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCA 13279 || |||||||| || | ||| || || || ||||| |||||||| || || || || || Sbjct 1866 AGACCTCGTTTCTTGAGCCAGAAGATTGCGGCAAAGGAACCCGAGAAGAAGATGCCCTCT 1925 Query 13280 ACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCT-CT-ATCCACT 13337 |||||||| || || | | |||| |||| | || || | | || || ||||| | Sbjct 1926 ACTGCTGCGAAAGCAACGACCCTTGTACCAAA-GT-CTGCGCTGTCGCTACTGATCCAGT 1983 Query 13338 TTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAAT 13397 ||||| | ||||| | | || || ||| | || | || || || | | Sbjct 1984 CCAGCGCCCATTGCGCTTTCTTGGTGACACACGGCATGGTCTCAACGGCATTGAAGAGGT 2043 Query 13398 AAtttttttCCTTA-CTG--TCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTG 13454 ||| | | || | ||| ||| || || || || || | ||| ||||||||||| Sbjct 2044 AATCTCT---CTGAGCTGAATCTTTGATGTATGTGTCGATGAGTAATGAATACATTTCTG 2100 Query 13455 AATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAA 13514 | || || ||||| || || || ||||| || || ||||| || ||||||| | ||| | Sbjct 2101 AGTGGATGTTTTCAATTGCAATCTGGAACCCGTAGAAACACCTCGCCTCTGCAATCTGCA 2160 Query 13515 CTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaa 13574 |||| | ||| ||||| | ||||| || || || || || || || ||||| || | Sbjct 2161 CTTCTTGGCTAAACCTTTCAACCAAGTTCTCATTGACAATACCATCGCTTGCAGCGAAGA 2220 Query 13575 aaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTGGAA 13634 ||||||| | ||| || || | | || || |||| | ||| ||||| | Sbjct 2221 AAGCAAGAACATGCGAGATGAAGTGCCTCTCATTGTCTGTGAGCTTGGCCCAATGGTCCA 2280 Query 13635 AATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATA 13692 | ||||| || | ||| |||||||| | ||||| || || || | |||||||| || Sbjct 2281 AGTCTTTGGAAAGATCGACCTCCTCGGCCGTCCAGAAGGATGCCTCCGCCTTCTTGTA 2338 >seq306440 Length=70067 Score = 86.0 bits (94), Expect = 5e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 13226 CGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCT 13285 ||||| || | ||| || || ||||||||||| || || |||||||||||||| ||||| Sbjct 67538 CGTTTCTTGAACCAGAAAATGGCAGCAAACGAGCCAGAGAAAAATATTCCTTCTACTGCA 67597 Query 13286 GCAAACGCTATCAACCTTTCACCATACGTACT 13317 || || || | |||||| |||||| | ||||| Sbjct 67598 GCGAATGCCACCAACCTCTCACCAAAGGTACT 67629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429286892881188