Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_005294.1 Length=42935 Score E Sequences producing significant alignments: (Bits) Value seq154944 246 8e-61 >seq154944 Length=270 Score = 246 bits (272), Expect = 8e-61 Identities = 216/269 (80%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 10431 GCAGAAGTTATCTATGAGGGCGACAAATTCCAAATTAAGAACGAAAATGGTAGGAAAGTT 10490 ||||||||||| || | |||||| | || |||| || |||||||| ||| | ||||| Sbjct 1 GCAGAAGTTATTTACAAAGGCGACGACTTTAAAATCAAAAACGAAAACGGTCGCAAAGTG 60 Query 10491 TTTGTTAGCCATGAAACGGATTGGGTTAATGCAGACAATCCAATCGCAGGAGCTTATTGT 10550 |||||||| ||||| || |||||| | ||||| || || ||||| || |||||||| Sbjct 61 TTTGTTAGTCATGATACCGATTGGATGAATGCGGATAACGAAATCGTCGGGGCTTATTGC 120 Query 10551 ATTATCGAAAAAGAGGATGGGGAGAAAATCCTGACTGTTATGACCAAAAAAGAAATTGAC 10610 || ||||||||||| ||||| || || || |||| ||||||||||||||||||||||| Sbjct 121 ATCATCGAAAAAGAAGATGGTGAAAAGATTTTGACGGTTATGACCAAAAAAGAAATTGAT 180 Query 10611 AAGTCTTGGGCACAAGCAAAAACAAAGAATGTTCAGAATAATTTTCCTCAAGAAATGGCT 10670 ||||| ||| || ||||||||||||| |||||||| ||| | || |||||||| ||||| Sbjct 181 AAGTCATGGTCAAAAGCAAAAACAAAAAATGTTCAAAATGACTTCCCTCAAGAGATGGCC 240 Query 10671 AAGCGCACAGTTATCAATCGTGCGGCTAA 10699 || || || ||||| ||||| || ||||| Sbjct 241 AAACGGACCGTTATTAATCGAGCAGCTAA 269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136744218019716