Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11]
322,794 sequences; 1,061,195,396 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq233793 86.0 5e-12
seq172955 82.4 6e-11
seq15040 82.4 6e-11
>seq233793
Length=42987
Score = 86.0 bits (94), Expect = 5e-12
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
|||||| || | ||| | || | ||| || || |||||| || |||||||| || |
Sbjct 13473 ACCTCCACGGAGCCTGAGAACAAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGA 13532
Query 48559 CA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617
| | || || |||||||||| ||||| || || | || | |||||||||||| |
Sbjct 13533 TAGAGTGCGGC-CGTCCTCCAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGG 13591
Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677
| | | |||||||||| ||| || ||| | | | ||||| || | | |||
Sbjct 13592 GGATGCCTTCCTTGTCCTGAATCTTTGCCTTTACGTTCTCGATGGTGTCACTTGGCTCAA 13651
Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
||| | |||||||| || || ||||| || ||||| || ||||||||
Sbjct 13652 CCTCAAGAGTTATGGTCTTGCCTGTGAGGGTCTTCACGAAGATCTGCAT 13700
Score = 82.4 bits (90), Expect = 6e-11
Identities = 157/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
|||||| || | ||| | || | ||| || || ||||||||| |||||||| || |
Sbjct 12790 ACCTCCACGGAGCCTGAGAACGAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCTGA 12849
Query 48559 CA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617
| | || || ||||||| || ||||| || || | || | |||||||||||| |
Sbjct 12850 TAGAGTGCGGC-CGTCCTCGAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGGG 12908
Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677
| | | |||||||||| ||| || ||| | | | | ||||| || | | |||
Sbjct 12909 GAATGCCTTCCTTGTCCTGAATCTTTGCCTTTACATTCTCGATGGTGTCACTTGGCTCAA 12968
Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
||| | || ||||| || || ||||| || || || || ||||||||
Sbjct 12969 CCTCAAGAGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATCTGCAT 13017
>seq172955
Length=397
Score = 82.4 bits (90), Expect = 6e-11
Identities = 157/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
|||||| || | ||| | || | ||| || || ||||||||| |||||||| || |
Sbjct 322 ACCTCCACGGAGCCTGAGAACAAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCTGA 263
Query 48559 CA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617
| | || || | ||||| || ||||| || || | || | |||||||||||| |
Sbjct 262 TAGAGTGCGGC-CATCCTCGAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGGG 204
Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677
| | | |||||||||| ||| || ||| | | | | ||||| ||| | | |||
Sbjct 203 GAATGCCTTCCTTGTCCTGAATCTTTGCCTTTACATTCTCGATGGTGTCGCTTGGCTCAA 144
Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
||| | || ||||| || || ||||| || || || || ||||||||
Sbjct 143 CCTCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 95
>seq15040
Length=705
Score = 82.4 bits (90), Expect = 6e-11
Identities = 157/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
|||||| || | ||| | || | ||| || || ||||| || |||||||| || |
Sbjct 549 ACCTCCACGGAGCCTGAGAACGAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCTGA 490
Query 48559 CA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617
| | || || ||||||| || ||||| || || | |||| |||||||||||| |
Sbjct 489 TAGAGTGCGGC-CGTCCTCGAGTTGCTTTCCAGCGAAGATTAGACGCTGCTGATCGGGGG 431
Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677
| | | |||||||||| ||| || ||| | | | | ||||| || | | |||
Sbjct 430 GAATGCCTTCCTTGTCCTGAATCTTTGCCTTTACATTCTCGATGGTGTCACTTGGCTCAA 371
Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
||||| || ||||| || || ||||| || || || || ||||||||
Sbjct 370 CCTCGAGAGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATCTGCAT 322
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419593975926794
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |