Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_006144.1 Length=34246 Score E Sequences producing significant alignments: (Bits) Value seq201746 168 1e-37 >seq201746 Length=230 Score = 168 bits (186), Expect = 1e-37 Identities = 170/211 (81%), Gaps = 9/211 (4%) Strand=Plus/Minus Query 6040 CCATTTGGTCAGAAAACACAATCTGTCGGTTGTCAAGCTTGGTTG-CAAAAGACCCGTAG 6098 |||| |||||||||| ||||||| | | ||||| |||||| || |||| ||||||||| Sbjct 209 CCATCTGGTCAGAAAG-ACAATCTTTTG--TGTCA-GCTTGGGTGGCAAACGACCCGTAG 154 Query 6099 AGGGCGTTGGAGAGCAACTTGGCGAT-GGAGCGC-TGGGTTTGGtttttttCCCGGTCGG 6156 ||||||||||| |||||||||||||| ||||||| |||||| | ||||| | || |||| Sbjct 153 AGGGCGTTGGACAGCAACTTGGCGATGGGAGCGCAGGGGTTTTGGTTTTTGCGCGATCGG 94 Query 6157 CTTTTTCCTTGGCTGCGATGTTGAGCTGGACGTACTCCCTGGCCACGCACTTCCAGCCGG 6216 | |||||||| |||||||| ||||| ||||| || | || |||||| ||| ||| Sbjct 93 CGCGCTCCTTGGCCGCGATGTTTAGCTGCACGTATTCGCGCGCAACGCACCGCCATTCGG 34 Query 6217 GAAAAACGGCCGTGCGCTCGTCCGGCACCAG 6247 | ||| ||| ||||||||||| |||||||| Sbjct 33 G-AAAGCGG-TGTGCGCTCGTCGGGCACCAG 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 109045998788224